Basic Information | |
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Species | Populus trichocarpa |
Cazyme ID | Potri.005G063400.1 |
Family | GH28 |
Protein Properties | Length: 491 Molecular Weight: 53719.2 Isoelectric Point: 5.9532 |
Chromosome | Chromosome/Scaffold: 05 Start: 4557365 End: 4561733 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 120 | 461 | 0 |
RGGAQLNVPEGRWVTGSFNLTSNFTLFLEEGAVILGSQDPKEWPIIEPLPSYGRGRERLGGRHISLIHGDGLANVVITGNNGTIDGQGKMWWELWWNRTL EHTRGHLVELMNSQDILISNLTFRNSPFWTIHPIYCSNLVVKDMTILAPLNAPNTDGIDPDSSTNVCIEDCYIESGDDLVAVKSGWDQYGIKMARPSSNI IIRRVSGTTPTCSGVGIGSEMSGGIFNVTIEDLHVWDSAAGVRIKTDKGRGGYIANITISDITMERVKIPIRFSSGSNDHPDERWDPKAVPVVKGVSITN LVSFNSTKAPVLEGIEDAPFGGICMKNISLLGVVSSPSWRCE |
Full Sequence |
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Protein Sequence Length: 491 Download |
MLKKMDFDEK QSFVLGGNAM MVKLSRFSWP PLLILITLLA LLSFQITSKT VYPIKIAFTS 60 STSKDDIVAD SRTCVGFFGE LPERKAVISI KDFGGVGDGK TSNTEAFRRA MRYVQGFGER 120 GGAQLNVPEG RWVTGSFNLT SNFTLFLEEG AVILGSQDPK EWPIIEPLPS YGRGRERLGG 180 RHISLIHGDG LANVVITGNN GTIDGQGKMW WELWWNRTLE HTRGHLVELM NSQDILISNL 240 TFRNSPFWTI HPIYCSNLVV KDMTILAPLN APNTDGIDPD SSTNVCIEDC YIESGDDLVA 300 VKSGWDQYGI KMARPSSNII IRRVSGTTPT CSGVGIGSEM SGGIFNVTIE DLHVWDSAAG 360 VRIKTDKGRG GYIANITISD ITMERVKIPI RFSSGSNDHP DERWDPKAVP VVKGVSITNL 420 VSFNSTKAPV LEGIEDAPFG GICMKNISLL GVVSSPSWRC EFVSGFANDV FPTPCPQLQI 480 DNSSSWCSYS * |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03010 | PLN03010 | 4.0e-21 | 93 | 390 | 315 | + polygalacturonase | ||
PLN02218 | PLN02218 | 4.0e-26 | 83 | 451 | 390 | + polygalacturonase ADPG | ||
PLN03003 | PLN03003 | 3.0e-26 | 77 | 415 | 352 | + Probable polygalacturonase At3g15720 | ||
pfam00295 | Glyco_hydro_28 | 9.0e-32 | 186 | 463 | 292 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
COG5434 | PGU1 | 2.0e-61 | 85 | 416 | 364 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI37530.1 | 0 | 49 | 487 | 40 | 476 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002274138.1 | 0 | 49 | 487 | 40 | 476 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002307030.1 | 0 | 88 | 481 | 1 | 394 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002310517.1 | 0 | 54 | 490 | 1 | 437 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002526639.1 | 0 | 18 | 490 | 5 | 480 | polygalacturonase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 1.99965e-42 | 80 | 436 | 22 | 397 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 1.99965e-42 | 80 | 436 | 22 | 397 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 1.99965e-42 | 80 | 436 | 22 | 397 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 1.99965e-42 | 80 | 436 | 22 | 397 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 1bhe_A | 2e-22 | 132 | 464 | 52 | 373 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |