Basic Information | |
---|---|
Species | Populus trichocarpa |
Cazyme ID | Potri.005G064500.2 |
Family | PL1 |
Protein Properties | Length: 210 Molecular Weight: 23546.6 Isoelectric Point: 9.9965 |
Chromosome | Chromosome/Scaffold: 05 Start: 4647397 End: 4648460 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
---|
NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
PL1 | 7 | 128 | 0 |
DGDAIRLVSASKVWIDHNTLFSCQDGLLDVTRGSTFVTVSNNWFRDQDKVMLLGHDDGFLRDKDMKVTVAFNHFGPNCNQRMPRVRHGYAHVTNNLYQGW EQYAIGGSMSPSIKSESNYFIA |
Full Sequence |
---|
Protein Sequence Length: 210 Download |
MQLGQMDGDA IRLVSASKVW IDHNTLFSCQ DGLLDVTRGS TFVTVSNNWF RDQDKVMLLG 60 HDDGFLRDKD MKVTVAFNHF GPNCNQRMPR VRHGYAHVTN NLYQGWEQYA IGGSMSPSIK 120 SESNYFIAPK SGKKEVTWRN GIYEKSKPWN FYSVGDLFTN GASFFQSGRR GMARPNYTKE 180 QSFKVGDAKS VKTLTSSAGA LKCSRTLRC* |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3866 | PelB | 8.0e-26 | 1 | 126 | 140 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 2.0e-50 | 4 | 126 | 131 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 9.0e-57 | 6 | 130 | 134 | + Amb_all domain. |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI26401.1 | 0 | 1 | 209 | 113 | 320 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002267384.1 | 0 | 1 | 209 | 162 | 369 | PREDICTED: similar to putative Cup s 1 pollen allergen [Vitis vinifera] |
RefSeq | XP_002299118.1 | 0 | 1 | 209 | 144 | 354 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002304865.1 | 0 | 1 | 209 | 144 | 352 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002527354.1 | 0 | 1 | 136 | 172 | 307 | Major pollen allergen Jun v 1 precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 7 | 201 | 149 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 7 | 201 | 149 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 2e-17 | 5 | 128 | 113 | 248 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1vbl_A | 3e-17 | 9 | 126 | 190 | 330 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
PDB | 3vmw_A | 0.000000000000001 | 7 | 193 | 119 | 314 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
EST Download unfiltered results here | ||||
---|---|---|---|---|
Hit | Length | Start | End | EValue |
DT575750 | 199 | 6 | 204 | 0 |
FG478648 | 201 | 13 | 210 | 0 |
FG474249 | 201 | 13 | 210 | 0 |
FG468635 | 177 | 7 | 182 | 0 |
FG468822 | 172 | 7 | 177 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
---|