Basic Information | |
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Species | Populus trichocarpa |
Cazyme ID | Potri.005G151600.1 |
Family | PL4 |
Protein Properties | Length: 327 Molecular Weight: 36505.2 Isoelectric Point: 6.5131 |
Chromosome | Chromosome/Scaffold: 05 Start: 14252948 End: 14255459 |
Description | Rhamnogalacturonate lyase family protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL4 | 56 | 193 | 1.7e-35 |
MPLPDDRLPPRDQPLAYPEAVQLANPVEPDFKGELDDKYQYSNEIKDNKVHGWICMDPLVGFRQITPSDEFRSGGPVKQNLTQPLLHAHYSGDGLVPYIG AGEAWKKVSEPVFMYFNSVMDGDDPLSIWEDAKLQLQR |
Full Sequence |
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Protein Sequence Length: 327 Download |
MPRLGVPTPC SRSSTRIKGT RFKVIVETEE QVEVSFTGGQ ARSSEHRQKR TTDRFMPLPD 60 DRLPPRDQPL AYPEAVQLAN PVEPDFKGEL DDKYQYSNEI KDNKVHGWIC MDPLVGFRQI 120 TPSDEFRSGG PVKQNLTQPL LHAHYSGDGL VPYIGAGEAW KKVSEPVFMY FNSVMDGDDP 180 LSIWEDAKLQ LQRITKNRIN DGLLVRDRLV SNDCIPANGA YAGVALPGDV MSDRGKENAS 240 TSTTINHNFK SWNTGCDIEM GDLVYEPPRD GPTLWERGIP DRSAKQFCAP CSNPKYINKL 300 YFNHPESLVM LACAKGNLSS RGLFLQ* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam06045 | Rhamnogal_lyase | 0.005 | 54 | 89 | 36 | + Rhamnogalacturonate lyase family. Rhamnogalacturonate lyase (EC:4.2.2.-) degrades the rhamnogalacturonan I (RG-I) backbone of pectin. This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi. | ||
pfam06045 | Rhamnogal_lyase | 0.0006 | 16 | 37 | 22 | + Rhamnogalacturonate lyase family. Rhamnogalacturonate lyase (EC:4.2.2.-) degrades the rhamnogalacturonan I (RG-I) backbone of pectin. This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi. | ||
cd10320 | RGL4_N | 2.0e-23 | 71 | 183 | 121 | + N-terminal catalytic domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold; the middle and C-terminal domains are both putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | NP_001062465.1 | 0 | 17 | 308 | 85 | 447 | Os08g0554300 [Oryza sativa (japonica cultivar-group)] |
RefSeq | XP_002301112.1 | 0 | 17 | 308 | 57 | 459 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002306521.1 | 0 | 1 | 326 | 1 | 326 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002527353.1 | 0 | 8 | 308 | 63 | 478 | lyase, putative [Ricinus communis] |
RefSeq | XP_002527357.1 | 0 | 54 | 308 | 167 | 478 | lyase, putative [Ricinus communis] |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
GR828586 | 188 | 71 | 232 | 0 |
EH722500 | 260 | 71 | 273 | 0 |
GW864372 | 274 | 71 | 287 | 0 |
DY830317 | 267 | 93 | 301 | 0 |
GW430189 | 196 | 54 | 223 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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