Basic Information | |
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Species | Populus trichocarpa |
Cazyme ID | Potri.005G168400.1 |
Family | GH3 |
Protein Properties | Length: 819 Molecular Weight: 90161.2 Isoelectric Point: 7.3353 |
Chromosome | Chromosome/Scaffold: 05 Start: 17882350 End: 17888812 |
Description | Glycosyl hydrolase family protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH3 | 82 | 344 | 0 |
AIPRLGIPAYEWWSEGLHGIGFLTRVQQGISFFNRTIQHATSFPQVILTAASFDAHIWYRIGQATGKEARALYNAGQVTGLGFWAPNVNIFRDPRWGRGQ ETPGEDPLVVGKYGASFVRGVQGDSFEGESTLGDHLQASACCKHYTAHDLDNWNGVNRFRFNAIVTLQDMADTYQPPFRSCVQEGKASGIMCSYNEINGI PSCAHYDLLTKTLRQEWGFYGYITSDCDAVNVLHVEQRYAKTPEDAVADALKSERISGMDVEC |
Full Sequence |
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Protein Sequence Length: 819 Download |
MTPRIKATLS IRLYSGTVTT RKDPYSCASA SQPPYSCDSS DPSTKTYDFC KTTLPISRRA 60 EDLVSRLTFE EKATQLVDTS PAIPRLGIPA YEWWSEGLHG IGFLTRVQQG ISFFNRTIQH 120 ATSFPQVILT AASFDAHIWY RIGQATGKEA RALYNAGQVT GLGFWAPNVN IFRDPRWGRG 180 QETPGEDPLV VGKYGASFVR GVQGDSFEGE STLGDHLQAS ACCKHYTAHD LDNWNGVNRF 240 RFNAIVTLQD MADTYQPPFR SCVQEGKASG IMCSYNEING IPSCAHYDLL TKTLRQEWGF 300 YGYITSDCDA VNVLHVEQRY AKTPEDAVAD ALKSERISGM DVECSTSARS KDFPVSYLRN 360 YTKSAVEKKK VTVSEIDRAL HNLFSTRMRL GLFNGDPTKQ LYSDIGPDQV CSQEHQALAL 420 EAALDGIVLL KNADRLLPLS KSGISSLAVI GPNAHNSTNL LGNYFGPACK NVTILEGLRN 480 YVSSASYEKG CNNVSCTSAA KKKPVEMAQT EDQVILVMGL DQSQEKERLD RMDLVLPGKQ 540 PTLITAVAKA AKRPIVLVLL GGSPMDVTFA KNNRKIGSIL WAGYPGQAGA TALAQIIFGE 600 HNPGEVLRCL HSVIWSLIQL ERGGGRLPMT WYPQDFTKVP MTDMRMRPQP STGNPGRTYR 660 FYEGEKVFEF GYGLSYSDYS YTFASVAQNQ LNVKDSSNQQ PENSETPGYK LVSDIGEEQC 720 ENIKFKVTVS VKNEGQMAGK HPVLLFARHA KPGKGRPIKK LVGFQTVKLG AGEKTEIEYE 780 LSPCEHLSSA NEDGVMVMEE GSQILLVGDK EHPVTIIV* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG1472 | BglX | 5.0e-51 | 81 | 456 | 382 | + Beta-glucosidase-related glycosidases [Carbohydrate transport and metabolism] | ||
pfam01915 | Glyco_hydro_3_C | 1.0e-53 | 427 | 677 | 257 | + Glycosyl hydrolase family 3 C-terminal domain. This domain is involved in catalysis and may be involved in binding beta-glucan. This domain is found associated with pfam00933. | ||
pfam00933 | Glyco_hydro_3 | 6.0e-65 | 77 | 379 | 306 | + Glycosyl hydrolase family 3 N terminal domain. | ||
PRK15098 | PRK15098 | 7.0e-83 | 61 | 783 | 786 | + beta-D-glucoside glucohydrolase; Provisional | ||
PLN03080 | PLN03080 | 0 | 24 | 816 | 803 | + Probable beta-xylosidase; Provisional |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAJ65923.1 | 0 | 30 | 818 | 25 | 704 | xylan 1,4-beta-xylosidase [Populus alba x Populus tremula] |
RefSeq | XP_002302284.1 | 0 | 30 | 817 | 27 | 741 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002306583.1 | 0 | 30 | 818 | 23 | 745 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002513892.1 | 0 | 29 | 818 | 23 | 774 | Periplasmic beta-glucosidase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3u48_B | 0 | 120 | 808 | 89 | 722 | A Chain A, The Structure Of Ascorbate Peroxidase Compound Ii |
PDB | 3u48_A | 0 | 120 | 808 | 89 | 722 | A Chain A, The Structure Of Ascorbate Peroxidase Compound Ii |
PDB | 3u4a_B | 0 | 120 | 808 | 89 | 722 | A Chain A, The Structure Of Ascorbate Peroxidase Compound Ii |
PDB | 3u4a_A | 0 | 120 | 808 | 89 | 722 | A Chain A, The Structure Of Ascorbate Peroxidase Compound Ii |
PDB | 2x41_A | 6e-38 | 59 | 808 | 3 | 699 | A Chain A, The Structure Of Ascorbate Peroxidase Compound Ii |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
(1,4)-β-xylan degradation | 3.2.1.37-RXN | EC-3.2.1.37 | xylan 1,4-β-xylosidase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
DW486060 | 316 | 51 | 366 | 0 |
CF212861 | 333 | 43 | 375 | 0 |
DY273227 | 304 | 30 | 333 | 0 |
DY910269 | 284 | 30 | 313 | 0 |
FC912034 | 276 | 30 | 305 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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