Basic Information | |
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Species | Populus trichocarpa |
Cazyme ID | Potri.005G172000.1 |
Family | GH17 |
Protein Properties | Length: 365 Molecular Weight: 39528.3 Isoelectric Point: 4.5491 |
Chromosome | Chromosome/Scaffold: 05 Start: 18674378 End: 18675680 |
Description | Glycosyl hydrolase superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH17 | 55 | 363 | 0 |
IGVCYGLNGNNLPPPSEVVGLYKRSGIEFIRLYEPRSDVLEALRGSGLAVALCPTNEDLANIAQRPDAADAWVNTNIAPYMSDVLFRWIILGNEVIPGPL ANYVPAAIANTRNSLAAIGLANVTVTTAIPGNALEASYPPSAGAFSSDVTDVMIAVAGILASSDAPLMINVYPYFAYASNPSQVPVDYALFAATTPVVTD GSFLYYDLFDAMVDAFHAALEKIGYPGLRVAIGESGWPSAGNDPYTSIDNAMIYNRNLVNHVLTNGTPRRPGEIMETFLFAMFNENLKQGAVEQNFGFFY PNMNPVYPF |
Full Sequence |
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Protein Sequence Length: 365 Download |
MERHAVFSYI PRMLKLEVEA KNKQMGLMSS MCRLILVTTI ILAAHQFSIS SSLPIGVCYG 60 LNGNNLPPPS EVVGLYKRSG IEFIRLYEPR SDVLEALRGS GLAVALCPTN EDLANIAQRP 120 DAADAWVNTN IAPYMSDVLF RWIILGNEVI PGPLANYVPA AIANTRNSLA AIGLANVTVT 180 TAIPGNALEA SYPPSAGAFS SDVTDVMIAV AGILASSDAP LMINVYPYFA YASNPSQVPV 240 DYALFAATTP VVTDGSFLYY DLFDAMVDAF HAALEKIGYP GLRVAIGESG WPSAGNDPYT 300 SIDNAMIYNR NLVNHVLTNG TPRRPGEIME TFLFAMFNEN LKQGAVEQNF GFFYPNMNPV 360 YPFW* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG5309 | COG5309 | 6.0e-5 | 48 | 356 | 335 | + Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism] | ||
pfam00332 | Glyco_hydro_17 | 4.0e-116 | 55 | 363 | 311 | + Glycosyl hydrolases family 17. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABN05912.1 | 0 | 27 | 363 | 1 | 316 | Glycoside hydrolase, family 17 [Medicago truncatula] |
GenBank | ABN05913.1 | 0 | 28 | 363 | 1 | 335 | Glycoside hydrolase, family 17 [Medicago truncatula] |
RefSeq | NP_177901.1 | 0 | 34 | 364 | 1 | 333 | glycosyl hydrolase family 17 protein [Arabidopsis thaliana] |
RefSeq | XP_002302261.1 | 0 | 55 | 364 | 7 | 317 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002306606.1 | 0 | 56 | 364 | 1 | 309 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2cyg_A | 0 | 55 | 361 | 1 | 308 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
PDB | 1ghr_A | 0 | 55 | 362 | 1 | 303 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
PDB | 1aq0_B | 0 | 55 | 362 | 1 | 303 | A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group |
PDB | 1aq0_A | 0 | 55 | 362 | 1 | 303 | A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group |
PDB | 3f55_D | 0 | 55 | 356 | 2 | 306 | A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
GR710242 | 277 | 62 | 338 | 0 |
JK802300 | 238 | 128 | 365 | 0 |
JK804435 | 229 | 137 | 365 | 0 |
DC899652 | 351 | 24 | 364 | 0 |
DT564091 | 232 | 21 | 252 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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