y
Basic Information | |
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Species | Populus trichocarpa |
Cazyme ID | Potri.005G202400.1 |
Family | CBM43 |
Protein Properties | Length: 262 Molecular Weight: 26900.1 Isoelectric Point: 6.4668 |
Chromosome | Chromosome/Scaffold: 05 Start: 21751159 End: 21755942 |
Description | Carbohydrate-binding X8 domain superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM43 | 110 | 192 | 3e-34 |
WCIASPSASPTALQVALDYACGYGGADCSAILPSGSCYNPNTVHDHASYAFNSYYQKNPVPSSCNFGGTAATTSTNPSTGTCQ |
Full Sequence |
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Protein Sequence Length: 262 Download |
MGGRVIYSLM FCLLGLFLSS SGSSVTKRSA NENSERAGHG SKQVVVLVNS ISGSQKDITT 60 PITTVPTIIP TTSTPLINPN SDPDSTSPAT ITPMVTPTST TTPVSPGASW CIASPSASPT 120 ALQVALDYAC GYGGADCSAI LPSGSCYNPN TVHDHASYAF NSYYQKNPVP SSCNFGGTAA 180 TTSTNPSTGT CQFPSTSTSS SVLNTTNSNG ATVYGAVPSN PAPSGINSLD LLHLSCCWLK 240 MSISDICRWC YTDLLLALLA S* 300 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam07983 | X8 | 8.0e-21 | 109 | 179 | 77 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
smart00768 | X8 | 4.0e-36 | 109 | 193 | 86 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | EEC79758.1 | 9.80909e-45 | 30 | 227 | 28 | 216 | hypothetical protein OsI_21142 [Oryza sativa Indica Group] |
RefSeq | NP_001031450.1 | 0 | 81 | 224 | 53 | 196 | unknown protein [Arabidopsis thaliana] |
RefSeq | XP_002283721.1 | 0 | 34 | 215 | 30 | 204 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002307548.1 | 0 | 107 | 186 | 1 | 80 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002441577.1 | 0 | 55 | 206 | 35 | 170 | hypothetical protein SORBIDRAFT_09g029700 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2jon_A | 6e-18 | 98 | 197 | 2 | 100 | A Chain A, Solution Structure Of The C-Terminal Domain Ole E 9 |