y
Basic Information | |
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Species | Populus trichocarpa |
Cazyme ID | Potri.006G008200.3 |
Family | CBM43 |
Protein Properties | Length: 247 Molecular Weight: 26314.1 Isoelectric Point: 6.7475 |
Chromosome | Chromosome/Scaffold: 06 Start: 548430 End: 549626 |
Description | Carbohydrate-binding X8 domain superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM43 | 160 | 242 | 2.6e-33 |
WCVAKPTVPDSIIQEALDYACGSGAECKQIQPNGHCFQPNTLVAHASYAFNSCWQKTKVRGGTCDFGGSAMLVTIDPSYNDCN |
Full Sequence |
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Protein Sequence Length: 247 Download |
MPIICFVADA RLPMQLLEKP EVSNQVNMKA DLEYGASSPL SLPPLQSLSP LSLPDSTPPY 60 CINPPFGPPS PSTTLPSPIG HIPAASPPPF APILPIQNPP PSPSYNFACP PTHTPTPKSP 120 HYEPSPPKRV PSPSGYQPPM VYPPPAVPSP PHKNPQYAVW CVAKPTVPDS IIQEALDYAC 180 GSGAECKQIQ PNGHCFQPNT LVAHASYAFN SCWQKTKVRG GTCDFGGSAM LVTIDPSYND 240 CNFINN* 300 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam07983 | X8 | 6.0e-21 | 160 | 230 | 76 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
smart00768 | X8 | 2.0e-36 | 160 | 243 | 84 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAN78496.1 | 0 | 9 | 246 | 31 | 262 | hypothetical protein [Vitis vinifera] |
EMBL | CBI34142.1 | 0 | 9 | 246 | 22 | 253 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002264622.1 | 0 | 9 | 241 | 31 | 258 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002307863.1 | 0 | 160 | 237 | 1 | 78 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002520569.1 | 0 | 75 | 246 | 70 | 249 | hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2jon_A | 8e-19 | 160 | 243 | 13 | 96 | A Chain A, Solution Structure Of The C-Terminal Domain Ole E 9 |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
CV259076 | 141 | 107 | 247 | 0 |
CK096422 | 143 | 105 | 247 | 0 |
EG665507 | 128 | 120 | 247 | 0 |
EG679311 | 128 | 120 | 247 | 0 |
CO982195 | 89 | 156 | 244 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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