y
Basic Information | |
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Species | Populus trichocarpa |
Cazyme ID | Potri.006G052700.1 |
Family | GH28 |
Protein Properties | Length: 457 Molecular Weight: 49278.2 Isoelectric Point: 4.756 |
Chromosome | Chromosome/Scaffold: 06 Start: 3778059 End: 3781928 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 113 | 444 | 0 |
KEACSSSEGAIVVVPRYTYRLKPITFQGPCKSNITLQVNGVIEASDDLSDYKEDGRHWLVFDSIQNLQVEGGGTIDGNGKIWWQNSCKVDKNLPCKDAPT AITFYECQNLVVKNLKIQNAQQMHVSFEKSNGVQVSNLTVTSPEGSPNTDGIHVAGTQNIQITDSVIGTGDDCISIVSGSQNVQASDITCGPGHGISIGS LGVHNSEDYVSGVTVNGAKFSGTTNGVRIKTWQGGSGSARNIEFLNIEMNNVTNPIIIDQNYCDQDEPCEEQRSAVQVKNVVYKNIKGTGASEVAIKFDC SKTYPCEGILMHDVNLEREGAGTAIASCNNVK |
Full Sequence |
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Protein Sequence Length: 457 Download |
MALRGALILY SFFMIFLSII SSYNCLQEDP LNNYLEEEAS GYDSRAYPSH YSTISEDGEF 60 KNLVKLRSDV LISLQAFSKV GGKSTSVRTV NVKDFGAKAV GGDDTETIEK AWKEACSSSE 120 GAIVVVPRYT YRLKPITFQG PCKSNITLQV NGVIEASDDL SDYKEDGRHW LVFDSIQNLQ 180 VEGGGTIDGN GKIWWQNSCK VDKNLPCKDA PTAITFYECQ NLVVKNLKIQ NAQQMHVSFE 240 KSNGVQVSNL TVTSPEGSPN TDGIHVAGTQ NIQITDSVIG TGDDCISIVS GSQNVQASDI 300 TCGPGHGISI GSLGVHNSED YVSGVTVNGA KFSGTTNGVR IKTWQGGSGS ARNIEFLNIE 360 MNNVTNPIII DQNYCDQDEP CEEQRSAVQV KNVVYKNIKG TGASEVAIKF DCSKTYPCEG 420 ILMHDVNLER EGAGTAIASC NNVKLAELGV VSPKCP* 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02155 | PLN02155 | 7.0e-89 | 66 | 453 | 390 | + polygalacturonase | ||
PLN02188 | PLN02188 | 5.0e-113 | 59 | 456 | 408 | + polygalacturonase/glycoside hydrolase family protein | ||
pfam00295 | Glyco_hydro_28 | 3.0e-129 | 116 | 444 | 329 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02793 | PLN02793 | 4.0e-138 | 69 | 453 | 388 | + Probable polygalacturonase | ||
PLN02218 | PLN02218 | 1.0e-160 | 44 | 455 | 418 | + polygalacturonase ADPG |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAF71160.1 | 0 | 1 | 456 | 1 | 456 | AF152758_1 polygalacturonase A [Actinidia chinensis] |
Swiss-Prot | P35336 | 0 | 1 | 455 | 1 | 455 | PGLR_ACTDE RecName: Full=Polygalacturonase; Short=PG; AltName: Full=Pectinase; Flags: Precursor |
RefSeq | XP_002308956.1 | 0 | 14 | 456 | 1 | 443 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002322711.1 | 0 | 1 | 455 | 1 | 452 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002529616.1 | 0 | 22 | 456 | 31 | 474 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 4e-26 | 175 | 374 | 107 | 314 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1nhc_F | 9e-20 | 184 | 401 | 77 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 9e-20 | 184 | 401 | 77 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 9e-20 | 184 | 401 | 77 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 9e-20 | 184 | 401 | 77 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |