Basic Information | |
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Species | Populus trichocarpa |
Cazyme ID | Potri.006G109900.3 |
Family | GH5 |
Protein Properties | Length: 473 Molecular Weight: 53355.1 Isoelectric Point: 5.6082 |
Chromosome | Chromosome/Scaffold: 06 Start: 8571635 End: 8574054 |
Description | Glycosyl hydrolase superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH5 | 83 | 418 | 2e-33 |
NDQPFYVNGFNTYWLMVFAADQSTRGKVTEVFQQASSVGLTVCRTWAFNDGQWRALQKSPGVYDEDVFKLALDFVVSEAKKYKIRLILSLTNNWDAYGGK AQYVKWGKATGLNLTSDDDFFSHPTLRSYYKAHVKAVLNRVNTLTNITYKDDPTIFAWELMNEPRCTSDPSGDKLQSWITDMAVYVKSMDAKHLVEIGLE GFYGPSAPDRAQFNPNSYATQVGTDFIRNHQVLGVDFASVHIYADSWISLTISDSHIQFIKSWMEAHIEDAERYLGMPVVFAEFGVSSKDPGYNTSFRDT MINTVYKTLLNSTKRGGSGAGSLLWQIFPDGTDYMD |
Full Sequence |
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Protein Sequence Length: 473 Download |
MDTHKRIFGF KIIFFVSIFI LLNECLKCSS FGVMDGDQWD TTAEEVDNHL PSSSSSQGAY 60 ELNDVGEDEW QMVARKGNQF VINDQPFYVN GFNTYWLMVF AADQSTRGKV TEVFQQASSV 120 GLTVCRTWAF NDGQWRALQK SPGVYDEDVF KLALDFVVSE AKKYKIRLIL SLTNNWDAYG 180 GKAQYVKWGK ATGLNLTSDD DFFSHPTLRS YYKAHVKAVL NRVNTLTNIT YKDDPTIFAW 240 ELMNEPRCTS DPSGDKLQSW ITDMAVYVKS MDAKHLVEIG LEGFYGPSAP DRAQFNPNSY 300 ATQVGTDFIR NHQVLGVDFA SVHIYADSWI SLTISDSHIQ FIKSWMEAHI EDAERYLGMP 360 VVFAEFGVSS KDPGYNTSFR DTMINTVYKT LLNSTKRGGS GAGSLLWQIF PDGTDYMDDG 420 YAIVLSKSPS TSNIISLHST RVAIFNSMCS WKCKWGCKKK NPLEALFYHD DL* 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam00150 | Cellulase | 0.0006 | 186 | 387 | 218 | + Cellulase (glycosyl hydrolase family 5). | ||
COG2730 | BglC | 0.0005 | 112 | 425 | 341 | + Endoglucanase [Carbohydrate transport and metabolism] | ||
COG3934 | COG3934 | 6.0e-25 | 113 | 438 | 335 | + Endo-beta-mannanase [Carbohydrate transport and metabolism] |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI18019.1 | 0 | 1 | 472 | 1 | 471 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002273389.1 | 0 | 62 | 472 | 1 | 410 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002309191.1 | 0 | 59 | 472 | 4 | 415 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002323680.1 | 0 | 60 | 472 | 5 | 414 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002528703.1 | 0 | 1 | 472 | 1 | 473 | hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1rh9_A | 0 | 73 | 443 | 7 | 370 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |
PDB | 3pzq_A | 0 | 81 | 434 | 21 | 376 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |
PDB | 3pzo_A | 0 | 81 | 434 | 21 | 376 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |
PDB | 3pzn_A | 0 | 81 | 434 | 21 | 376 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |
PDB | 3pzm_A | 0 | 81 | 434 | 21 | 376 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |