| Basic Information | |
|---|---|
| Species | Populus trichocarpa |
| Cazyme ID | Potri.006G120100.1 |
| Family | CE8 |
| Protein Properties | Length: 420 Molecular Weight: 46281.4 Isoelectric Point: 9.399 |
| Chromosome | Chromosome/Scaffold: 06 Start: 9513387 End: 9515650 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CE8 | 101 | 390 | 0 |
| LTVDLKGCGNFSSIQEAVDVVPELSSSTTLIIMDSGTYREKVTVHAKKTNLILLGQGYLNTAIAWNDTANSTGGTVYSASVAIFASNFIAYNISFKNTAP WPSPGEVGGQAVALRIAGDKAAFYGCGFYGAQDTLHDDSGRHYFRGCFIQGSIDFIFGNARSLYQSCTISSIAEQPKAGVSGSITAQARQSVSEQTGFSF VNCTVIGSGKVWLGRAWGAYATVVFSKTYMSHAVSSDGWNDWRDPSRDQTAFFGEYECFGPGANFTFRASYGKQLTQYEAAPYMDISYID | |||
| Full Sequence |
|---|
| Protein Sequence Length: 420 Download |
| MRIKAISFWL LAFAIALVSI VIALYEISPS PSTGTPISNL HSSSLTTLKR VIKKSGLEVF 60 HSLVASSFSR HHHRRKHKIK CDMNKWISSR LIYRYKVSLV LTVDLKGCGN FSSIQEAVDV 120 VPELSSSTTL IIMDSGTYRE KVTVHAKKTN LILLGQGYLN TAIAWNDTAN STGGTVYSAS 180 VAIFASNFIA YNISFKNTAP WPSPGEVGGQ AVALRIAGDK AAFYGCGFYG AQDTLHDDSG 240 RHYFRGCFIQ GSIDFIFGNA RSLYQSCTIS SIAEQPKAGV SGSITAQARQ SVSEQTGFSF 300 VNCTVIGSGK VWLGRAWGAY ATVVFSKTYM SHAVSSDGWN DWRDPSRDQT AFFGEYECFG 360 PGANFTFRAS YGKQLTQYEA APYMDISYID GNQWLYQQNI LPSISNNDRE RRKHFIQLF* 420 |
| Functional Domains Download unfiltered results here | ||||||
|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description |
| PLN02432 | PLN02432 | 2.0e-100 | 98 | 395 | 298 | + putative pectinesterase |
| PLN02634 | PLN02634 | 5.0e-104 | 99 | 395 | 304 | + probable pectinesterase |
| PLN02665 | PLN02665 | 3.0e-111 | 100 | 395 | 297 | + pectinesterase family protein |
| PLN02682 | PLN02682 | 6.0e-128 | 93 | 395 | 310 | + pectinesterase family protein |
| PLN02304 | PLN02304 | 4.0e-147 | 100 | 395 | 299 | + probable pectinesterase |
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0005618 | cell wall |
| GO:0030599 | pectinesterase activity |
| GO:0042545 | cell wall modification |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CBI30191.1 | 0 | 44 | 412 | 41 | 413 | unnamed protein product [Vitis vinifera] |
| RefSeq | NP_181209.1 | 0 | 79 | 408 | 71 | 398 | pectinesterase family protein [Arabidopsis thaliana] |
| RefSeq | XP_002264941.1 | 0 | 100 | 412 | 14 | 323 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002326223.1 | 0 | 83 | 419 | 1 | 337 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002519425.1 | 0 | 30 | 400 | 30 | 374 | Pectinesterase PPE8B precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1gq8_A | 0 | 101 | 395 | 9 | 308 | A Chain A, Pectin Methylesterase From Carrot |
| PDB | 1xg2_A | 9.00054e-42 | 107 | 395 | 11 | 304 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 2ntq_B | 3e-18 | 111 | 383 | 18 | 328 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 2ntq_A | 3e-18 | 111 | 383 | 18 | 328 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 2ntp_B | 3e-18 | 111 | 383 | 18 | 328 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |
