Basic Information | |
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Species | Populus trichocarpa |
Cazyme ID | Potri.006G122000.1 |
Family | PL1 |
Protein Properties | Length: 487 Molecular Weight: 53391.1 Isoelectric Point: 5.8326 |
Chromosome | Chromosome/Scaffold: 06 Start: 9747016 End: 9750996 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 140 | 339 | 0 |
IVFPTNMLIKLSQELIFNSYKTLDGRGANVHISGGGCITLQYISNVIIHNIHIHHCVQSGNTNVRSSPTHFGYRTKSDGDGISIFGSKDIWIDHCSLSHC KDGLIDAVMGSTGITISNNFFSHHNEVMLLGHSDDYSPDSGMQVTIAFNHFGEQLVQRMPRCRRGYIHVVNNDFTQWEMYAIGGSGNPTINSQGNRYTAP |
Full Sequence |
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Protein Sequence Length: 487 Download |
MLTISCIVLT LILSSFSPLG SAMLNRTLLV PHPNPEEVVQ EVQRRVNASV SRRQTLQVLS 60 QEDQSTCLTG NPIDDCWKCD PDWPNNRQRL ADCAIGFGQY AMGGKNGEYY IVTDSSDDDA 120 VNPRPGTLRY AVIQPQPLWI VFPTNMLIKL SQELIFNSYK TLDGRGANVH ISGGGCITLQ 180 YISNVIIHNI HIHHCVQSGN TNVRSSPTHF GYRTKSDGDG ISIFGSKDIW IDHCSLSHCK 240 DGLIDAVMGS TGITISNNFF SHHNEVMLLG HSDDYSPDSG MQVTIAFNHF GEQLVQRMPR 300 CRRGYIHVVN NDFTQWEMYA IGGSGNPTIN SQGNRYTAPS NRNAKEVTKR VDTAEDDWRG 360 WNWRSEGDIL VNGAFFVASG AELEVKYEKA YSVEPKSAVL IDLLTMHSGV LGVGGRNNNL 420 GMWSTGSNGG KEGLGSGEGD DYLDDYSGSS ISLPPPSPYA LLPILTALIY LLSFQYIIAA 480 ALTSML* |
Functional Domains Download unfiltered results here | ||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description |
COG3866 | PelB | 2.0e-21 | 158 | 334 | 189 | + Pectate lyase [Carbohydrate transport and metabolism] |
pfam00544 | Pec_lyase_C | 2.0e-62 | 152 | 336 | 207 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. |
smart00656 | Amb_all | 2.0e-71 | 145 | 340 | 207 | + Amb_all domain. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAM61400.1 | 0 | 1 | 474 | 1 | 473 | pectate lyase-like protein [Arabidopsis thaliana] |
EMBL | CAB64222.1 | 0 | 22 | 474 | 4 | 454 | pectate lyase-like protein [Arabidopsis thaliana] |
RefSeq | NP_566979.1 | 0 | 1 | 474 | 2 | 474 | pectate lyase family protein [Arabidopsis thaliana] |
RefSeq | XP_002326380.1 | 0 | 67 | 412 | 1 | 346 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002519460.1 | 0 | 1 | 486 | 1 | 483 | Pectate lyase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 71 | 411 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 71 | 411 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 2e-16 | 140 | 336 | 50 | 246 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1vbl_A | 0.00000000000006 | 164 | 311 | 138 | 299 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
PDB | 1pe9_B | 0.0000000000008 | 184 | 409 | 115 | 357 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |