Basic Information | |
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Species | Populus trichocarpa |
Cazyme ID | Potri.006G137100.1 |
Family | CE8 |
Protein Properties | Length: 376 Molecular Weight: 41793.7 Isoelectric Point: 9.3208 |
Chromosome | Chromosome/Scaffold: 06 Start: 11362593 End: 11364555 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 80 | 363 | 0 |
RVAKDGFADFTTISDALETIPKDNKRRTIIQIGGGEYWEKITIKCNKPFITFYGDPMDIPRIVFNGTASQYGTIYSATVAVESDYFMAVNVAFVNSAPLP NVNRTGGQAVSMRISGDKAAFHNCKFIGFQDTLCDDRGRHFFKDCYVRGTVDFIFGNGKSLYLNTTIDSVAEGTGVITAQAREHVTEDSGFTFIHCNLTG LGNNTYLGRAWKQRPRVVFAYTYMGHLINDEGWSTWKFPEREGTVYYGEYKCAGPGSSSFGRVPYTKSLSKAEAKPFLSMTYIN |
Full Sequence |
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Protein Sequence Length: 376 Download |
MKRSFSSFAL LLITLQAIQT IPTAISTTKL VPADISKVKA WVAKNINDFN DRKSNDSKGI 60 PRIVLDELLA SAEDRLRLIR VAKDGFADFT TISDALETIP KDNKRRTIIQ IGGGEYWEKI 120 TIKCNKPFIT FYGDPMDIPR IVFNGTASQY GTIYSATVAV ESDYFMAVNV AFVNSAPLPN 180 VNRTGGQAVS MRISGDKAAF HNCKFIGFQD TLCDDRGRHF FKDCYVRGTV DFIFGNGKSL 240 YLNTTIDSVA EGTGVITAQA REHVTEDSGF TFIHCNLTGL GNNTYLGRAW KQRPRVVFAY 300 TYMGHLINDE GWSTWKFPER EGTVYYGEYK CAGPGSSSFG RVPYTKSLSK AEAKPFLSMT 360 YINGNKWLIP PPKFP* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02671 | PLN02671 | 3.0e-89 | 70 | 368 | 311 | + pectinesterase | ||
PLN02432 | PLN02432 | 1.0e-89 | 78 | 368 | 292 | + putative pectinesterase | ||
PLN02304 | PLN02304 | 3.0e-99 | 81 | 370 | 299 | + probable pectinesterase | ||
PLN02682 | PLN02682 | 2.0e-110 | 76 | 370 | 303 | + pectinesterase family protein | ||
PLN02665 | PLN02665 | 0 | 26 | 374 | 350 | + pectinesterase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI27759.1 | 0 | 11 | 374 | 28 | 390 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002277202.1 | 0 | 31 | 372 | 31 | 364 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002277518.1 | 0 | 11 | 374 | 16 | 378 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002326144.1 | 0 | 1 | 375 | 1 | 375 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002516214.1 | 0 | 1 | 374 | 1 | 378 | Pectinesterase-3 precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 9.94922e-44 | 79 | 368 | 9 | 308 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 9.99967e-42 | 81 | 368 | 7 | 304 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 3uw0_A | 4e-16 | 88 | 299 | 43 | 276 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
PDB | 2ntq_B | 0.00000000000003 | 89 | 243 | 18 | 187 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
PDB | 2ntq_A | 0.00000000000003 | 89 | 243 | 18 | 187 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |