Basic Information | |
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Species | Populus trichocarpa |
Cazyme ID | Potri.006G139500.1 |
Family | GH28 |
Protein Properties | Length: 497 Molecular Weight: 55264.4 Isoelectric Point: 9.3057 |
Chromosome | Chromosome/Scaffold: 06 Start: 11694921 End: 11700860 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 108 | 457 | 0 |
SKRGGGQLNVPPGRWLTAPFNLTSHMTLFLAEGAVILGIQDEKYWPLMPALPSYGYGREHPGPRYGSLIHGQNLRDVVITGHNGTIDGQGQTWWKKYRQK LLNHTRGPLVQIMWSSDIVFTNITLRDSPFWTLHPYDCKNVTIRNVTILAPIFEAPNTDGIDPDSCEDMVIEDCYISVGDDAIAIKSGWDQYGIAYGRPS TNILIRNLVVRSMVSAGISIGSEMSGGVSNVTVENVLVWSSRRAVRIKTAPGRGGYVRHITYRNLTFDNVRVGIVIKTDYNEHPDEGYDPKAVPILGDIS FTGIHGQGVRVPVRIHGSQEIPVRNVTFWDMSVGLTYKKKHIFQCAFVQG |
Full Sequence |
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Protein Sequence Length: 497 Download |
MMVETIAPPP SSRFNYKRLE LKRCLPAFLS SHKTLFALLW IAAFASVFLW KRNPVGAGLA 60 VFWRGPLRPM PQLRPVAFNL TDFGAVGDGA TVNTEAFERA VSAISKLSKR GGGQLNVPPG 120 RWLTAPFNLT SHMTLFLAEG AVILGIQDEK YWPLMPALPS YGYGREHPGP RYGSLIHGQN 180 LRDVVITGHN GTIDGQGQTW WKKYRQKLLN HTRGPLVQIM WSSDIVFTNI TLRDSPFWTL 240 HPYDCKNVTI RNVTILAPIF EAPNTDGIDP DSCEDMVIED CYISVGDDAI AIKSGWDQYG 300 IAYGRPSTNI LIRNLVVRSM VSAGISIGSE MSGGVSNVTV ENVLVWSSRR AVRIKTAPGR 360 GGYVRHITYR NLTFDNVRVG IVIKTDYNEH PDEGYDPKAV PILGDISFTG IHGQGVRVPV 420 RIHGSQEIPV RNVTFWDMSV GLTYKKKHIF QCAFVQGRVI GTVFPAPCEN LDRYDEQGKL 480 VKRSVSQNLT DIDYDF* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02793 | PLN02793 | 1.0e-27 | 66 | 468 | 423 | + Probable polygalacturonase | ||
PLN02218 | PLN02218 | 7.0e-28 | 44 | 387 | 360 | + polygalacturonase ADPG | ||
PLN03003 | PLN03003 | 3.0e-32 | 77 | 440 | 378 | + Probable polygalacturonase At3g15720 | ||
pfam00295 | Glyco_hydro_28 | 1.0e-39 | 176 | 447 | 278 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
COG5434 | PGU1 | 6.0e-72 | 77 | 398 | 345 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAN69988.1 | 0 | 2 | 496 | 1 | 509 | hypothetical protein [Vitis vinifera] |
RefSeq | XP_002277239.1 | 0 | 2 | 496 | 1 | 493 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002324728.1 | 0 | 2 | 496 | 1 | 495 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002326133.1 | 0 | 2 | 496 | 1 | 495 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002516244.1 | 0 | 1 | 496 | 1 | 494 | polygalacturonase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 0 | 71 | 437 | 21 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 0 | 71 | 437 | 21 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 0 | 71 | 437 | 21 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 0 | 71 | 437 | 21 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 1bhe_A | 4e-20 | 122 | 435 | 52 | 361 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
HO778855 | 451 | 2 | 452 | 0 |
FN769574 | 320 | 152 | 471 | 0 |
FE707848 | 301 | 79 | 379 | 0 |
JK989090 | 297 | 201 | 497 | 0 |
CX102356 | 331 | 133 | 463 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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