| Basic Information | |
|---|---|
| Species | Populus trichocarpa |
| Cazyme ID | Potri.006G144500.6 |
| Family | GH35 |
| Protein Properties | Length: 688 Molecular Weight: 75247.9 Isoelectric Point: 6.3465 |
| Chromosome | Chromosome/Scaffold: 06 Start: 12263119 End: 12268650 |
| Description | beta galactosidase 1 |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| GH35 | 1 | 187 | 0 |
| MQKFTEKIVGMMKSEKLFENQGGPIILSQIENEYGPVEWEIGAPGKAYTKWAADMAVKLGTGVPWIMCKQEDAPDPMIDTCNGFYCENFKPNKDYKPKIW TEAWTGWYTEFGGAVPHRPAEDMAFSVARFIQNGGSYINYYMYHGGTNFGRTAGGPFIATSYDYDAPLDEFGLPREPKWGHLRDLHK | |||
| Full Sequence |
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| Protein Sequence Length: 688 Download |
| MQKFTEKIVG MMKSEKLFEN QGGPIILSQI ENEYGPVEWE IGAPGKAYTK WAADMAVKLG 60 TGVPWIMCKQ EDAPDPMIDT CNGFYCENFK PNKDYKPKIW TEAWTGWYTE FGGAVPHRPA 120 EDMAFSVARF IQNGGSYINY YMYHGGTNFG RTAGGPFIAT SYDYDAPLDE FGLPREPKWG 180 HLRDLHKAIK LCEPALVSVD PTVTSLGSNQ EAHVFKSKSV CAAFLANYDT KYSVKVTFGN 240 GQYELPPWSV SILPDCKTAV YNTARLGSQS SQMKMVPASS SFSWQSYNEE TASADDDDTT 300 TMNGLWEQIN VTRDATDYLW YLTDVKIDAD EGFLKSGQNP LLTIFSAGHA LHVFINGQLA 360 GTAYGGLSNP KLTFSQNIKL TEGINKISLL SVAVGLPNVG LHFETWNAGV LGPITLKGLN 420 EGTRDLSGQK WSYKIGLKGE SLSLHTASGS ESVEWVEGSL LAQKQALTWY KTAFDAPQGN 480 DPLALDMSSM GKGQMWINGQ NIGRHWPGYI AHGSCGDCNY AGTFDDKKCR TNCGEPSQRW 540 YHVPRSWLKP SGNLLAVFEE WGGDPTGISF VKRTTASVCA DIFEGQPALK NWQAIASGKV 600 ISPQPKAHLW CPTGQKISQI KFASFGMPQG TCGSFREGSC HAHKSYDAFE RNCVGKQSCS 660 VTVAPEVFGG DPCPDSAKKL SVEAVCS* |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG1874 | LacA | 0.009 | 2 | 179 | 235 | + Beta-galactosidase [Carbohydrate transport and metabolism] | ||
| pfam02140 | Gal_Lectin | 5.0e-22 | 609 | 686 | 82 | + Galactose binding lectin domain. | ||
| pfam01301 | Glyco_hydro_35 | 1.0e-79 | 1 | 189 | 204 | + Glycosyl hydrolases family 35. | ||
| PLN03059 | PLN03059 | 0 | 1 | 687 | 687 | + beta-galactosidase; Provisional | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005529 | Interacting selectively and non-covalently with any carbohydrate, which includes monosaccharides, oligosaccharides and polysaccharides as well as substances derived from monosaccharides by reduction of the carbonyl group (alditols), by oxidation of one or more hydroxy groups to afford the corresponding aldehydes, ketones, or carboxylic acids, or by replacement of one or more hydroxy group(s) by a hydrogen atom. Cyclitols are generally not regarded as carbohydrates." [CHEBI:16646, GOC:mah] |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABV32546.1 | 0 | 1 | 687 | 152 | 836 | beta-galactosidase protein 1 [Prunus persica] |
| GenBank | ABY71826.1 | 0 | 1 | 687 | 152 | 836 | beta-galactosidase [Prunus salicina] |
| EMBL | CBI27912.1 | 0 | 1 | 687 | 147 | 833 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002308268.1 | 0 | 1 | 687 | 152 | 838 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002514108.1 | 0 | 1 | 687 | 154 | 840 | beta-galactosidase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3d3a_A | 0.000000000000003 | 3 | 185 | 120 | 325 | A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides Thetaiotaomicron |
| PDB | 4e8d_B | 0.00000001 | 20 | 174 | 143 | 315 | A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides Thetaiotaomicron |
| PDB | 4e8d_B | 0.0001 | 318 | 575 | 385 | 586 | A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides Thetaiotaomicron |
| PDB | 4e8d_A | 0.00000001 | 20 | 174 | 143 | 315 | A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides Thetaiotaomicron |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| lactose degradation III | BETAGALACTOSID-RXN | EC-3.2.1.23 | β-galactosidase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| HO780602 | 586 | 1 | 574 | 0 |
| HO795552 | 489 | 1 | 489 | 0 |
| HO778160 | 577 | 1 | 574 | 0 |
| CO117566 | 302 | 31 | 331 | 0 |
| HO784793 | 322 | 13 | 331 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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