y
Basic Information | |
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Species | Populus trichocarpa |
Cazyme ID | Potri.006G186100.1 |
Family | CE8 |
Protein Properties | Length: 366 Molecular Weight: 39885.3 Isoelectric Point: 9.2664 |
Chromosome | Chromosome/Scaffold: 06 Start: 20018522 End: 20020917 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 69 | 355 | 0 |
IKVRKDGSGEFKTLKDAINSIPTGNKERVIVHIGPGEYIEKLKIERGKPFVTFLGSPSNMPTLSFDGTARKYGTVYSATLEAEADYFVAANIIIKNSAPR PKGQLKGEQAVALRISGDKSAFYNCRFIGFQDTLCDDKGRHLFKDCYIEGTVDYIFGSGKSLYLGTELHVIGDEKGNFITAHARNNEAENTGFSFVHCKV DGTGTKRAYLGRAWQQRPRVVFSYTTMSSVVNPEGWSNNFHPERDHTALFGEYKCKGEGANPAARAKASKQLTPGQVAPFISLGFIE |
Full Sequence |
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Protein Sequence Length: 366 Download |
IGTCIAAIQC AITAILLVST TVSSDDKSPI PADPSSLNKW FQDNVRPLAN RKGTIDPALM 60 AAEAKPRTIK VRKDGSGEFK TLKDAINSIP TGNKERVIVH IGPGEYIEKL KIERGKPFVT 120 FLGSPSNMPT LSFDGTARKY GTVYSATLEA EADYFVAANI IIKNSAPRPK GQLKGEQAVA 180 LRISGDKSAF YNCRFIGFQD TLCDDKGRHL FKDCYIEGTV DYIFGSGKSL YLGTELHVIG 240 DEKGNFITAH ARNNEAENTG FSFVHCKVDG TGTKRAYLGR AWQQRPRVVF SYTTMSSVVN 300 PEGWSNNFHP ERDHTALFGE YKCKGEGANP AARAKASKQL TPGQVAPFIS LGFIEGSKWL 360 LHPPN* 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02432 | PLN02432 | 2.0e-86 | 69 | 360 | 293 | + putative pectinesterase | ||
PLN02671 | PLN02671 | 1.0e-89 | 67 | 360 | 304 | + pectinesterase | ||
PLN02304 | PLN02304 | 5.0e-91 | 68 | 360 | 301 | + probable pectinesterase | ||
PLN02682 | PLN02682 | 4.0e-115 | 61 | 362 | 311 | + pectinesterase family protein | ||
PLN02665 | PLN02665 | 0 | 16 | 365 | 350 | + pectinesterase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | XP_002309337.1 | 0 | 8 | 365 | 11 | 368 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002318197.1 | 0 | 5 | 365 | 4 | 364 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002321778.1 | 0 | 10 | 365 | 10 | 362 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002333446.1 | 0 | 1 | 365 | 1 | 365 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002511043.1 | 0 | 5 | 364 | 8 | 364 | Pectinesterase-1 precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 3.99931e-42 | 69 | 360 | 9 | 308 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 1e-37 | 71 | 360 | 7 | 304 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 1qjv_B | 5e-23 | 79 | 348 | 18 | 328 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
PDB | 1qjv_A | 5e-23 | 79 | 348 | 18 | 328 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
PDB | 2ntq_B | 2e-22 | 79 | 348 | 18 | 328 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |