Basic Information | |
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Species | Populus trichocarpa |
Cazyme ID | Potri.006G214400.1 |
Family | PL1 |
Protein Properties | Length: 386 Molecular Weight: 42779.4 Isoelectric Point: 7.5651 |
Chromosome | Chromosome/Scaffold: 06 Start: 22812542 End: 22816714 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 118 | 297 | 0 |
IVFEVSGTIQLGSYLNVSSYKTIDGRGQRIKLTGKGLRLKECEHVIICNLEFEGGRGPDVDGIQIKPKSKHIWIDRCSLRDYDDGLIDINRESTDITVSR CHFAQHDKTILIGADPTHVGDRCIRVTIHHCFFDGTRQRHPRVRFGKVHLYNNYIRNWGIYAVCASVESQIYSQCNIYEA |
Full Sequence |
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Protein Sequence Length: 386 Download |
MGNSHAHGHH RKFRNNGNVP SPDKTASAPS PSQPVPPSIY QPEHPLIPNS SIHASSMATS 60 LPYSHVDSAL RALAAQAEGF GRCAIGGLHG PIYYVTTLLD DGPGSLRDGC RKKEPLWIVF 120 EVSGTIQLGS YLNVSSYKTI DGRGQRIKLT GKGLRLKECE HVIICNLEFE GGRGPDVDGI 180 QIKPKSKHIW IDRCSLRDYD DGLIDINRES TDITVSRCHF AQHDKTILIG ADPTHVGDRC 240 IRVTIHHCFF DGTRQRHPRV RFGKVHLYNN YIRNWGIYAV CASVESQIYS QCNIYEAGQK 300 KIAFKYLSEK AADKEEASSG CIRSEGDLFV IGAQAGLMAE DGEFCMFHPS EYYPTWTIEP 360 PTDSLKQVLQ HCTGWQCVPR PADHP* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam00544 | Pec_lyase_C | 4.0e-36 | 113 | 293 | 201 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
COG3866 | PelB | 1.0e-46 | 86 | 368 | 302 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
smart00656 | Amb_all | 3.0e-66 | 132 | 298 | 179 | + Amb_all domain. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABK93648.1 | 0 | 1 | 385 | 1 | 382 | unknown [Populus trichocarpa] |
GenBank | ABK96132.1 | 0 | 1 | 385 | 1 | 385 | unknown [Populus trichocarpa] |
RefSeq | XP_002277576.1 | 0 | 29 | 383 | 16 | 368 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002309435.1 | 0 | 57 | 385 | 1 | 329 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002323433.1 | 0 | 57 | 385 | 1 | 329 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 2e-38 | 64 | 353 | 12 | 327 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 2e-38 | 64 | 353 | 12 | 327 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 9e-26 | 84 | 378 | 21 | 332 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1vbl_A | 1e-25 | 134 | 295 | 130 | 330 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
PDB | 3vmw_A | 4e-21 | 114 | 296 | 46 | 247 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
DY275282 | 327 | 59 | 383 | 0 |
DY289690 | 325 | 40 | 360 | 0 |
DY277275 | 310 | 61 | 370 | 0 |
JG177860 | 304 | 78 | 381 | 0 |
DY277275 | 22 | 362 | 383 | 0.075 |
Sequence Alignments (This image is cropped. Click for full image.) |
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