Basic Information | |
---|---|
Species | Populus trichocarpa |
Cazyme ID | Potri.006G218500.1 |
Family | PL4 |
Protein Properties | Length: 679 Molecular Weight: 77188.2 Isoelectric Point: 6.9151 |
Chromosome | Chromosome/Scaffold: 06 Start: 23094802 End: 23100066 |
Description | Rhamnogalacturonate lyase family protein |
View CDS |
External Links |
---|
NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
PL4 | 56 | 658 | 0 |
KNRQRVVIDNGLVEVTFSSPDGDVTGIKYKGIDNVLEIGNDEDNRGYWDVVWNKPGDPIIFDKLVATDFKVIMEDENQVEVSFTKTWDLSMGNSTVPLNV DKRYIVRRGQSGLYLYTILERLEGWPDVDMDQIRVVFKLQKDKFHYMALSDSRKRTMPMPEDRVSGQPLAYPEAVLLTKPINLKLRGEVDDKYQYSCEDK DNKVHGWTAEDPPVGFWMITPSNEFRVGGPNKQDLTSHVGPVVLNMFTSTHYAGKDLNTAYRNGEPWKKVLGPVFVYLNSISPKENSSMLWEDAKEQMSI EVNRWPYDFPQSEDFPSSDQRGAVTGQLLVRDRYVNQRLTYASSAYVGLAAPGDVGSWQTESKGYQFWIRADRHGHFVIKNVRAGNYSLYAWVPGVIGDY KYGANITINPGSRIRFGHLIYEPPRNGPTLWDIGIPDRTAAEFYVPDGYPTLMNTLYTREPAEKFRQYGLWNRYSDLYPNDDLVYTIGISNVKDWFFAHV TRDAGNKTYDPTTWQIIFELENVNRNENYTLRLALASATASEIQVRFNNPSSDRPLFTTGAVGKDNAIARHGIHGLYWLYGIDVPGSQLVEGKNTIYLTQ ARS |
Full Sequence |
---|
Protein Sequence Length: 679 Download |
MITKMKNVRC RGGCHLTSVV WLIIFCFFTA AFAKTPVRKI PRTSDSSALG VQLNIKNRQR 60 VVIDNGLVEV TFSSPDGDVT GIKYKGIDNV LEIGNDEDNR GYWDVVWNKP GDPIIFDKLV 120 ATDFKVIMED ENQVEVSFTK TWDLSMGNST VPLNVDKRYI VRRGQSGLYL YTILERLEGW 180 PDVDMDQIRV VFKLQKDKFH YMALSDSRKR TMPMPEDRVS GQPLAYPEAV LLTKPINLKL 240 RGEVDDKYQY SCEDKDNKVH GWTAEDPPVG FWMITPSNEF RVGGPNKQDL TSHVGPVVLN 300 MFTSTHYAGK DLNTAYRNGE PWKKVLGPVF VYLNSISPKE NSSMLWEDAK EQMSIEVNRW 360 PYDFPQSEDF PSSDQRGAVT GQLLVRDRYV NQRLTYASSA YVGLAAPGDV GSWQTESKGY 420 QFWIRADRHG HFVIKNVRAG NYSLYAWVPG VIGDYKYGAN ITINPGSRIR FGHLIYEPPR 480 NGPTLWDIGI PDRTAAEFYV PDGYPTLMNT LYTREPAEKF RQYGLWNRYS DLYPNDDLVY 540 TIGISNVKDW FFAHVTRDAG NKTYDPTTWQ IIFELENVNR NENYTLRLAL ASATASEIQV 600 RFNNPSSDRP LFTTGAVGKD NAIARHGIHG LYWLYGIDVP GSQLVEGKNT IYLTQARSDG 660 PFQGVMYDYI RFEGPRGT* |
Functional Domains Download unfiltered results here | ||||||
---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description |
cd10316 | RGL4_M | 8.0e-29 | 375 | 469 | 95 | + Middle domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle domain represented by this model and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. |
cd10317 | RGL4_C | 1.0e-41 | 486 | 673 | 191 | + C-terminal domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. |
cd10320 | RGL4_N | 7.0e-73 | 60 | 335 | 282 | + N-terminal catalytic domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold; the middle and C-terminal domains are both putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. |
pfam06045 | Rhamnogal_lyase | 1.0e-85 | 22 | 244 | 225 | + Rhamnogalacturonate lyase family. Rhamnogalacturonate lyase (EC:4.2.2.-) degrades the rhamnogalacturonan I (RG-I) backbone of pectin. This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi. |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | NP_179847.1 | 0 | 48 | 675 | 49 | 674 | lyase [Arabidopsis thaliana] |
RefSeq | XP_002308510.1 | 0 | 5 | 678 | 1 | 674 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002319997.1 | 0 | 61 | 678 | 1 | 620 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002527229.1 | 0 | 5 | 675 | 1 | 667 | lyase, putative [Ricinus communis] |
RefSeq | XP_002527245.1 | 0 | 61 | 678 | 2 | 621 | lyase, putative [Ricinus communis] |