Basic Information | |
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Species | Populus trichocarpa |
Cazyme ID | Potri.006G218500.2 |
Family | PL4 |
Protein Properties | Length: 552 Molecular Weight: 62986.7 Isoelectric Point: 6.3702 |
Chromosome | Chromosome/Scaffold: 06 Start: 23096402 End: 23100221 |
Description | Rhamnogalacturonate lyase family protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL4 | 3 | 531 | 0 |
DENQVEVSFTKTWDLSMGNSTVPLNVDKRYIVRRGQSGLYLYTILERLEGWPDVDMDQIRVVFKLQKDKFHYMALSDSRKRTMPMPEDRVSGQPLAYPEA VLLTKPINLKLRGEVDDKYQYSCEDKDNKVHGWTAEDPPVGFWMITPSNEFRVGGPNKQDLTSHVGPVVLNMFTSTHYAGKDLNTAYRNGEPWKKVLGPV FVYLNSISPKENSSMLWEDAKEQMSIEVNRWPYDFPQSEDFPSSDQRGAVTGQLLVRDRYVNQRLTYASSAYVGLAAPGDVGSWQTESKGYQFWIRADRH GHFVIKNVRAGNYSLYAWVPGVIGDYKYGANITINPGSRIRFGHLIYEPPRNGPTLWDIGIPDRTAAEFYVPDGYPTLMNTLYTREPAEKFRQYGLWNRY SDLYPNDDLVYTIGISNVKDWFFAHVTRDAGNKTYDPTTWQIIFELENVNRNENYTLRLALASATASEIQVRFNNPSSDRPLFTTGAVGKDNAIARHGIH GLYWLYGIDVPGSQLVEGKNTIYLTQARS |
Full Sequence |
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Protein Sequence Length: 552 Download |
MEDENQVEVS FTKTWDLSMG NSTVPLNVDK RYIVRRGQSG LYLYTILERL EGWPDVDMDQ 60 IRVVFKLQKD KFHYMALSDS RKRTMPMPED RVSGQPLAYP EAVLLTKPIN LKLRGEVDDK 120 YQYSCEDKDN KVHGWTAEDP PVGFWMITPS NEFRVGGPNK QDLTSHVGPV VLNMFTSTHY 180 AGKDLNTAYR NGEPWKKVLG PVFVYLNSIS PKENSSMLWE DAKEQMSIEV NRWPYDFPQS 240 EDFPSSDQRG AVTGQLLVRD RYVNQRLTYA SSAYVGLAAP GDVGSWQTES KGYQFWIRAD 300 RHGHFVIKNV RAGNYSLYAW VPGVIGDYKY GANITINPGS RIRFGHLIYE PPRNGPTLWD 360 IGIPDRTAAE FYVPDGYPTL MNTLYTREPA EKFRQYGLWN RYSDLYPNDD LVYTIGISNV 420 KDWFFAHVTR DAGNKTYDPT TWQIIFELEN VNRNENYTLR LALASATASE IQVRFNNPSS 480 DRPLFTTGAV GKDNAIARHG IHGLYWLYGI DVPGSQLVEG KNTIYLTQAR SDGPFQGVMY 540 DYIRFEGPRG T* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
cd10316 | RGL4_M | 5.0e-29 | 248 | 342 | 95 | + Middle domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle domain represented by this model and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
cd10317 | RGL4_C | 1.0e-41 | 359 | 546 | 191 | + C-terminal domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
pfam06045 | Rhamnogal_lyase | 2.0e-48 | 2 | 117 | 118 | + Rhamnogalacturonate lyase family. Rhamnogalacturonate lyase (EC:4.2.2.-) degrades the rhamnogalacturonan I (RG-I) backbone of pectin. This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi. | ||
cd10320 | RGL4_N | 5.0e-58 | 2 | 208 | 207 | + N-terminal catalytic domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold; the middle and C-terminal domains are both putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | NP_179847.1 | 0 | 2 | 548 | 128 | 674 | lyase [Arabidopsis thaliana] |
RefSeq | XP_002308510.1 | 0 | 1 | 551 | 124 | 674 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002319997.1 | 0 | 1 | 548 | 68 | 617 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002527229.1 | 0 | 1 | 548 | 121 | 667 | lyase, putative [Ricinus communis] |
RefSeq | XP_002527245.1 | 0 | 1 | 551 | 69 | 621 | lyase, putative [Ricinus communis] |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
DY969340 | 314 | 145 | 457 | 0 |
GW864372 | 311 | 63 | 371 | 0 |
JG640880 | 272 | 71 | 340 | 0 |
EH792178 | 309 | 203 | 505 | 0 |
EE260349 | 250 | 304 | 552 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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