Basic Information | |
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Species | Populus trichocarpa |
Cazyme ID | Potri.006G252900.1 |
Family | GH28 |
Protein Properties | Length: 393 Molecular Weight: 40731.9 Isoelectric Point: 7.9224 |
Chromosome | Chromosome/Scaffold: 06 Start: 25828818 End: 25832844 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 45 | 369 | 0 |
CGASGGTPTLVIPPGRAFSLKPVKFEGPCKSNSVHIQVAGNIVAPSTVAGWGGCGILFWLCFSNVNGLVLDGSGHIDGRGSQWWNHVMYPFPALLFNNNN NLKLSGLNVVNSPRSHVNLNDCKGVSISGLKITAPGNSPNTDGIDVSSSSHVSIVDSTIGTGDDCIAIKGGCSNINITGINCGPGHGISIGSLGENGATE QVEEVHVRNCNFTGTENGARIKTVPGGSGYVRRITFEQITLNAAGSPIIIDQHYCDGKKEGCPDQAVAVSDVTFTGVRGTSSDEQVITLDCAAIGCNNIR MVQVAITSSVAGKRRTAFCSNAHGT |
Full Sequence |
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Protein Sequence Length: 393 Download |
MKKYTGYSLL RDDASKPFNV LSFGAVGDGK TDDSPAFTKA WGALCGASGG TPTLVIPPGR 60 AFSLKPVKFE GPCKSNSVHI QVAGNIVAPS TVAGWGGCGI LFWLCFSNVN GLVLDGSGHI 120 DGRGSQWWNH VMYPFPALLF NNNNNLKLSG LNVVNSPRSH VNLNDCKGVS ISGLKITAPG 180 NSPNTDGIDV SSSSHVSIVD STIGTGDDCI AIKGGCSNIN ITGINCGPGH GISIGSLGEN 240 GATEQVEEVH VRNCNFTGTE NGARIKTVPG GSGYVRRITF EQITLNAAGS PIIIDQHYCD 300 GKKEGCPDQA VAVSDVTFTG VRGTSSDEQV ITLDCAAIGC NNIRMVQVAI TSSVAGKRRT 360 AFCSNAHGTS VSTAPAVPCL SGRAFARKFL TH* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam00295 | Glyco_hydro_28 | 9.0e-66 | 48 | 367 | 328 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 1.0e-68 | 6 | 379 | 389 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02793 | PLN02793 | 8.0e-79 | 11 | 381 | 383 | + Probable polygalacturonase | ||
PLN03003 | PLN03003 | 6.0e-93 | 15 | 381 | 373 | + Probable polygalacturonase At3g15720 | ||
PLN03010 | PLN03010 | 1.0e-102 | 18 | 373 | 358 | + polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | XP_002266797.1 | 0 | 18 | 380 | 18 | 372 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002266960.1 | 0 | 9 | 380 | 11 | 389 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002309621.1 | 0 | 16 | 357 | 1 | 342 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002324855.1 | 0 | 15 | 381 | 24 | 395 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002515526.1 | 0 | 18 | 382 | 28 | 394 | Polygalacturonase-2 precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2iq7_G | 8e-30 | 104 | 365 | 63 | 330 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 8e-30 | 104 | 365 | 63 | 330 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_E | 8e-30 | 104 | 365 | 63 | 330 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_D | 8e-30 | 104 | 365 | 63 | 330 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_C | 8e-30 | 104 | 365 | 63 | 330 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
CX192293 | 256 | 50 | 305 | 0 |
EL454770 | 271 | 18 | 278 | 0 |
GO025017 | 206 | 176 | 380 | 0 |
DY961682 | 274 | 5 | 267 | 0 |
CV536748 | 258 | 84 | 335 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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