Basic Information | |
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Species | Populus trichocarpa |
Cazyme ID | Potri.006G255100.1 |
Family | CBM57 |
Protein Properties | Length: 651 Molecular Weight: 70813.7 Isoelectric Point: 5.5448 |
Chromosome | Chromosome/Scaffold: 06 Start: 25995342 End: 26000344 |
Description | Leucine-rich repeat transmembrane protein kinase |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM57 | 405 | 573 | 9.8e-30 |
SVKCGGTGQTSASGVEYEGDFESMGSASLYTSSENLWAVSNTGNFISNPNGPQYIAQTGSQITGTLDSELYKTARISPSSLRYYGLGLKNGIYSVELHFA EIGMVDSHSWKGLGRRIFDVYIQGERVLKDFNIKEAAGGSKKALIKTLEANVTNTIMDIHFFWAGKGTC |
Full Sequence |
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Protein Sequence Length: 651 Download |
MGVLSFFFFV FLVSQVGFGQ QTTDPKEVDA LNKLIDYWNL RDRLNITDDP CIQNATWANE 60 IANPRVACDC GGNTCHITHL KIYALDISGE IPSELFVLKD LMDLNLGQNV LNGSIPAEIE 120 QLSNMQYLSL GINNFTGPVP QELGNLTKLI ILSFSSNNFV GSLPTSLGKL TSLQELYIDS 180 SGVSGPIPQE LANLKSLQIL WASDNQFTGK LPDFFGTLTE LRTLRLQGTL LEGPIPNSFS 240 ALNKLEDLRI GDLSGEDSSL EFLQNQKTLS ILILRNCLLS GKIPDQLGEF SKLQELDLSF 300 NKLTGQIPES FQDLVSLQYL YLGSNNLNGQ LPANILGPNI IAIDVSFNPL SGSLPQNFAK 360 AGLSMNVVGT SIDANNLQDK KASGMLQCLQ ADFKCSNKVP SKSFSVKCGG TGQTSASGVE 420 YEGDFESMGS ASLYTSSENL WAVSNTGNFI SNPNGPQYIA QTGSQITGTL DSELYKTARI 480 SPSSLRYYGL GLKNGIYSVE LHFAEIGMVD SHSWKGLGRR IFDVYIQGER VLKDFNIKEA 540 AGGSKKALIK TLEANVTNTI MDIHFFWAGK GTCCIPYQST YGPLVSAIHV SRASDAAGSS 600 KGDKKRIGKL IGISVACVAG LVIISSVFYL WWIKEDSPKH KRIYTDSPRK * 660 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN00113 | PLN00113 | 4.0e-37 | 73 | 356 | 286 | + leucine-rich repeat receptor-like protein kinase; Provisional | ||
PLN00113 | PLN00113 | 6.0e-39 | 80 | 408 | 359 | + leucine-rich repeat receptor-like protein kinase; Provisional | ||
PLN00113 | PLN00113 | 2.0e-39 | 69 | 358 | 305 | + leucine-rich repeat receptor-like protein kinase; Provisional | ||
PLN00113 | PLN00113 | 2.0e-41 | 77 | 380 | 331 | + leucine-rich repeat receptor-like protein kinase; Provisional | ||
pfam11721 | Malectin | 8.0e-56 | 402 | 588 | 190 | + Di-glucose binding within endoplasmic reticulum. Malectin is a membrane-anchored protein of the endoplasmic reticulum that recognises and binds Glc2-N-glycan. It carries a signal peptide from residues 1-26, a C-terminal transmembrane helix from residues 255-274, and a highly conserved central part of approximately 190 residues followed by an acidic, glutamate-rich region. Carbohydrate-binding is mediated by the four aromatic residues, Y67, Y89, Y116, and F117 and the aspartate at D186. NMR-based ligand-screening studies has shown binding of the protein to maltose and related oligosaccharides, on the basis of which the protein has been designated "malectin", and its endogenous ligand is found to be Glc2-high-mannose N-glycan. |
Gene Ontology | |
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GO Term | Description |
GO:0005515 | protein binding |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI21051.1 | 0 | 1 | 650 | 1 | 649 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002282711.1 | 0 | 1 | 650 | 157 | 791 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002309634.1 | 0 | 144 | 593 | 72 | 466 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002324865.1 | 0 | 1 | 649 | 1 | 593 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002515504.1 | 0 | 1 | 650 | 245 | 894 | ATP binding protein, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3rj0_A | 2e-23 | 86 | 333 | 326 | 553 | A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides Thetaiotaomicron |
PDB | 3rj0_A | 3e-23 | 58 | 356 | 374 | 719 | A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides Thetaiotaomicron |
PDB | 3rj0_A | 8e-16 | 86 | 312 | 474 | 722 | A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides Thetaiotaomicron |
PDB | 3rj0_A | 0.0000000002 | 101 | 377 | 99 | 377 | A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides Thetaiotaomicron |