| Basic Information | |
|---|---|
| Species | Populus trichocarpa |
| Cazyme ID | Potri.006G255100.2 |
| Family | CBM57 |
| Protein Properties | Length: 524 Molecular Weight: 57202 Isoelectric Point: 6.1842 |
| Chromosome | Chromosome/Scaffold: 06 Start: 25995401 End: 26000354 |
| Description | Leucine-rich repeat transmembrane protein kinase |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| CBM57 | 288 | 446 | 1.4e-27 |
| SASGVEYEGDFESMGSASLYTSSENLWAVSNTGNFISNPNGPQYIAQTGSQITGTLDSELYKTARISPSSLRYYGLGLKNGIYSVELHFAEIGMVDSHSW KGLGRRIFDVYIQGERVLKDFNIKEAAGGSKKALIKTLEANVTNTIMDIHFFWAGKGTC | |||
| Full Sequence |
|---|
| Protein Sequence Length: 524 Download |
| MGVLSFFFFV FLVSQVGFGQ QTTDPKEVDA LNKLIDYWNL RDRLNITDDP CIQNATWANE 60 IANPRVACDC GGNTCHITHL KIYALDISGE IPSELFVLKD LMDLNLGQNV LNGSIPAEIE 120 QLSNMQYLSF SSNNFVGSLP TSLGKLTSLQ ELWASDNQFT GKLPDFFGTL TELRTLRLQG 180 TLLEGPIPNS FSALNKLEDL ILRNCLLSGK IPDQLGEFSK LQELDVSFNP LSGSLPQNFA 240 KAGLSMNVVG TSIDANNLQD KKASGMLQCL QADFKCSNKV PSSTGQTSAS GVEYEGDFES 300 MGSASLYTSS ENLWAVSNTG NFISNPNGPQ YIAQTGSQIT GTLDSELYKT ARISPSSLRY 360 YGLGLKNGIY SVELHFAEIG MVDSHSWKGL GRRIFDVYIQ GERVLKDFNI KEAAGGSKKA 420 LIKTLEANVT NTIMDIHFFW AGKGTCCIPY QSTYGPLVSA IHVSRASDAA GSSKGDKKRI 480 GKLIGISVAC VAGLVIISSV FYLWWIKEDS PKHKRIYTDS PRK* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN00113 | PLN00113 | 2.0e-24 | 73 | 239 | 192 | + leucine-rich repeat receptor-like protein kinase; Provisional | ||
| PLN00113 | PLN00113 | 2.0e-24 | 72 | 261 | 190 | + leucine-rich repeat receptor-like protein kinase; Provisional | ||
| PLN00113 | PLN00113 | 5.0e-25 | 64 | 256 | 199 | + leucine-rich repeat receptor-like protein kinase; Provisional | ||
| PLN00113 | PLN00113 | 2.0e-26 | 82 | 237 | 161 | + leucine-rich repeat receptor-like protein kinase; Provisional | ||
| pfam11721 | Malectin | 1.0e-52 | 287 | 461 | 178 | + Di-glucose binding within endoplasmic reticulum. Malectin is a membrane-anchored protein of the endoplasmic reticulum that recognises and binds Glc2-N-glycan. It carries a signal peptide from residues 1-26, a C-terminal transmembrane helix from residues 255-274, and a highly conserved central part of approximately 190 residues followed by an acidic, glutamate-rich region. Carbohydrate-binding is mediated by the four aromatic residues, Y67, Y89, Y116, and F117 and the aspartate at D186. NMR-based ligand-screening studies has shown binding of the protein to maltose and related oligosaccharides, on the basis of which the protein has been designated "malectin", and its endogenous ligand is found to be Glc2-high-mannose N-glycan. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0005515 | protein binding |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CBI21051.1 | 0 | 1 | 523 | 1 | 649 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002282711.1 | 0 | 1 | 523 | 157 | 791 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002309634.1 | 0 | 1 | 466 | 1 | 466 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002324865.1 | 0 | 1 | 522 | 1 | 593 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002515504.1 | 0 | 1 | 523 | 245 | 894 | ATP binding protein, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1ogq_A | 0.000000000000003 | 47 | 246 | 30 | 201 | A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense |
| PDB | 1ogq_A | 0.0000000000002 | 76 | 237 | 102 | 286 | A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense |
| PDB | 3rj0_A | 0.00000000000008 | 86 | 255 | 351 | 529 | A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense |
| PDB | 3rj0_A | 0.000000000002 | 58 | 241 | 374 | 557 | A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense |
| PDB | 3rj0_A | 0.00000000001 | 101 | 258 | 222 | 377 | A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense |
