Basic Information | |
---|---|
Species | Populus trichocarpa |
Cazyme ID | Potri.006G256700.1 |
Family | CE8 |
Protein Properties | Length: 570 Molecular Weight: 62309.8 Isoelectric Point: 9.8773 |
Chromosome | Chromosome/Scaffold: 06 Start: 26107514 End: 26109613 |
Description | pectin methylesterase 3 |
View CDS |
External Links |
---|
NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
CE8 | 258 | 553 | 0 |
DVVVAADGNGNYKTVSAAVAAAPKYSSKRYIIRIKAGVYRENVEVPKEKSNIMFLGDGRKTTIITGSRNVVGGSTTYHSATVAVEGQGFLARDITFQNTA GPSKYQAVALRVESDFAAFYKCGMLGYQNTLYVHSNRQFFRNCFIAGTIDFIFGNAAAVFQDCDIRARRPNPGQTITITAQGRSDPTQNTGIVIQKCRIG VTSDLHPVRSNFSAYLGRPWKEYARTVIMQSSISDVIHPAGWNGLKGRFALSTLSFAEYENSGAGAGTSKRVTWEGYKMITSATEAQSFTPRNFIG |
Full Sequence |
---|
Protein Sequence Length: 570 Download |
MTEANQYISI SKKNKKLILA IFASFLLVAT IIAVVTVVNS HKNSTQDDAS HAKLETSCNS 60 IKYPDLCSSS ISTLSAAADT LKVPMNVFLG QINITIDAAQ SNMVALSKKY SIPRFKKQKP 120 ALDDCWKNYD GVVTYLKKVF ADVEVYTKRK PPQPQADQDL KTRLSSCSTS VNSCLDGFSH 180 SKENNNARRQ LFSGIIDVTV NCRKALEMIK SEPTADMAAG LKTTNRKLKE GNDSNEGGAE 240 WLSVTDRRLF QLSSLTPDVV VAADGNGNYK TVSAAVAAAP KYSSKRYIIR IKAGVYRENV 300 EVPKEKSNIM FLGDGRKTTI ITGSRNVVGG STTYHSATVA VEGQGFLARD ITFQNTAGPS 360 KYQAVALRVE SDFAAFYKCG MLGYQNTLYV HSNRQFFRNC FIAGTIDFIF GNAAAVFQDC 420 DIRARRPNPG QTITITAQGR SDPTQNTGIV IQKCRIGVTS DLHPVRSNFS AYLGRPWKEY 480 ARTVIMQSSI SDVIHPAGWN GLKGRFALST LSFAEYENSG AGAGTSKRVT WEGYKMITSA 540 TEAQSFTPRN FIGGSSWLKS TTFPFSLDL* |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02484 | PLN02484 | 2.0e-145 | 57 | 565 | 517 | + probable pectinesterase/pectinesterase inhibitor | ||
PLN02201 | PLN02201 | 1.0e-153 | 66 | 569 | 509 | + probable pectinesterase/pectinesterase inhibitor | ||
PLN02301 | PLN02301 | 4.0e-160 | 41 | 566 | 532 | + pectinesterase/pectinesterase inhibitor | ||
PLN02313 | PLN02313 | 0 | 40 | 569 | 546 | + Pectinesterase/pectinesterase inhibitor | ||
pfam01095 | Pectinesterase | 0 | 258 | 555 | 298 | + Pectinesterase. |
Gene Ontology | |
---|---|
GO Term | Description |
GO:0004857 | enzyme inhibitor activity |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | XP_002309640.1 | 0 | 1 | 569 | 1 | 542 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002309641.1 | 0 | 1 | 569 | 1 | 567 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002331121.1 | 0 | 1 | 569 | 1 | 572 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002331123.1 | 0 | 1 | 569 | 1 | 573 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002336803.1 | 0 | 1 | 569 | 1 | 542 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 0 | 253 | 569 | 3 | 319 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 0 | 255 | 565 | 1 | 311 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 1qjv_B | 4e-26 | 269 | 527 | 18 | 315 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
PDB | 1qjv_A | 4e-26 | 269 | 527 | 18 | 315 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
PDB | 2ntq_B | 8e-26 | 269 | 527 | 18 | 315 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
Metabolic Pathways | |||
---|---|---|---|
Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |