y
Basic Information | |
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Species | Populus trichocarpa |
Cazyme ID | Potri.007G009600.3 |
Family | GT5 |
Protein Properties | Length: 669 Molecular Weight: 75315.5 Isoelectric Point: 7.9731 |
Chromosome | Chromosome/Scaffold: 07 Start: 748469 End: 759404 |
Description | UDP-Glycosyltransferase superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GT5 | 188 | 652 | 0 |
HIIQICTEMEPLVSVGSLSSYVTGLSKALQKKGHIVEVILPKYACLDLTEMQGLREIEAELYSYFNGQLHGNRIWTGIVHGIGVTLIQPLYYSSFFDRER VYGYSDDFERFTYFSRASLDYIAKSGKQPDVLHIHNWETAIVGPLFWDIFVKQGLGGTRVLLTCHGFDSQCLEQPDKLALCGLDPARLHRPDRLQDHTMT HLVNILKGGLVYSNKVVMVQSIYSKERIINSFSHGLEPTLAIHKDKLLVSPCGFDNSTWDPSKDKFLPKNYSADDLKGKSICKVALQQQLGLSKNSSTVL VGCISTESLDFDLNNQKAVWNATPKSVQFIFMGSKATSADGALEYLKKELKDETVRFINKYDEALLHLIFAGSDIILCQSFHDPLLQVPLKALKYGAAPV AVTSNENKFRHFVDREQETTRFSRFISSTFGYLSLSQAVDEIKNSPSKWKQKMVDAMAKDFSWNA |
Full Sequence |
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Protein Sequence Length: 669 Download |
MKMESIINST ILSLACFPKS NPSIHHQKTV KARRTVCCSL SSKNSNSEGD ANGLLKEEEE 60 EKYNDIWLLF KEAQQNILYL NKLRLVAVEE LNKANREKQL LLDKIQQLEA VNKLGNEQSL 120 WRELLLRIDS MVLTGLIDSA EASGMRKAVM GNKFSVALVF FDIRQKTDAE LLAQLRHFSV 180 GSRKNGFHII QICTEMEPLV SVGSLSSYVT GLSKALQKKG HIVEVILPKY ACLDLTEMQG 240 LREIEAELYS YFNGQLHGNR IWTGIVHGIG VTLIQPLYYS SFFDRERVYG YSDDFERFTY 300 FSRASLDYIA KSGKQPDVLH IHNWETAIVG PLFWDIFVKQ GLGGTRVLLT CHGFDSQCLE 360 QPDKLALCGL DPARLHRPDR LQDHTMTHLV NILKGGLVYS NKVVMVQSIY SKERIINSFS 420 HGLEPTLAIH KDKLLVSPCG FDNSTWDPSK DKFLPKNYSA DDLKGKSICK VALQQQLGLS 480 KNSSTVLVGC ISTESLDFDL NNQKAVWNAT PKSVQFIFMG SKATSADGAL EYLKKELKDE 540 TVRFINKYDE ALLHLIFAGS DIILCQSFHD PLLQVPLKAL KYGAAPVAVT SNENKFRHFV 600 DREQETTRFS RFISSTFGYL SLSQAVDEIK NSPSKWKQKM VDAMAKDFSW NAECCDVHVS 660 AYTALKSL* 720 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02939 | PLN02939 | 0.002 | 19 | 109 | 96 | + transferase, transferring glycosyl groups | ||
PRK00654 | glgA | 9.0e-83 | 188 | 652 | 491 | + glycogen synthase; Provisional | ||
cd03791 | GT1_Glycogen_synthase_DULL1_like | 2.0e-85 | 188 | 652 | 504 | + This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms. | ||
TIGR02095 | glgA | 7.0e-94 | 187 | 651 | 488 | + glycogen/starch synthase, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate [Energy metabolism, Biosynthesis and degradation of polysaccharides]. | ||
PLN02939 | PLN02939 | 5.0e-118 | 120 | 650 | 558 | + transferase, transferring glycosyl groups |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACD13787.1 | 0 | 43 | 668 | 57 | 687 | starch synthase V precursor [Lotus japonicus] |
GenBank | ACD13788.1 | 0 | 1 | 668 | 5 | 677 | starch synthase V precursor [Solanum tuberosum] |
GenBank | ACD13789.1 | 0 | 3 | 668 | 1 | 682 | starch synthase V precursor [Vitis vinifera] |
RefSeq | XP_002310316.1 | 0 | 1 | 668 | 1 | 669 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002528907.1 | 0 | 185 | 650 | 205 | 671 | starch synthase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3guh_A | 4e-21 | 189 | 651 | 3 | 463 | A Chain A, Crystal Structure Of Wild-Type E.Coli Gs In Complex With Adp And Glucose(Wtgsb) |
PDB | 2r4u_A | 4e-21 | 189 | 651 | 3 | 463 | A Chain A, Crystal Structure Of Wild-Type E.Coli Gs In Complex With Adp And Glucose(Wtgsb) |
PDB | 2r4t_A | 4e-21 | 189 | 651 | 3 | 463 | A Chain A, Crystal Structure Of Wild-Type E.Coli Gs In Complex With Adp And Glucose(Wtgsb) |
PDB | 2qzs_A | 4e-21 | 189 | 651 | 3 | 463 | A Chain A, Crystal Structure Of Wild-Type E.Coli Gs In Complex With Adp And Glucose(Wtgsb) |
PDB | 3cx4_A | 7e-21 | 189 | 651 | 3 | 463 | A Chain A, Crystal Structure Of Wild-Type E.Coli Gs In Complex With Adp And Glucose(Wtgsb) |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
starch biosynthesis | GLYCOGENSYN-RXN | EC-2.4.1.21 | starch synthase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
EY766100 | 284 | 200 | 483 | 0 |
EL455989 | 316 | 156 | 471 | 0 |
DV455772 | 265 | 338 | 601 | 0 |
EY764753 | 237 | 159 | 395 | 0 |
EY764753 | 27 | 398 | 424 | 0.18 |
Sequence Alignments (This image is cropped. Click for full image.) |
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