Basic Information | |
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Species | Populus trichocarpa |
Cazyme ID | Potri.007G015700.1 |
Family | CE8 |
Protein Properties | Length: 361 Molecular Weight: 40035.1 Isoelectric Point: 9.4169 |
Chromosome | Chromosome/Scaffold: 07 Start: 1162657 End: 1165274 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 66 | 352 | 0 |
KKPRSGAFPTVQKAINSLPVINNCRVVISISAGTYREKVEIPATMAYITLRGAGADRTIIEWDDTADRMENGRPLGTFGSATFAVNSPYFIAKDITFKNK APLPPSGALGKQAVALRISADTAAFISCKFIGAQDTLYDHIGRHYFKKCYIEGSVDFIFGNGLSLYEDCHLHAVTTSFGALTAQKRQSFLEETGFSFVSC KVTGSGALFLGRAWGNFSRVVFAYTFMDKIITPRGWYDWGDKSRQMTVFFGQYKCSGPGADFGGRVAWSRELTDQQAKPFISIGFID |
Full Sequence |
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Protein Sequence Length: 361 Download |
MVLKLLLLMV LFVNANSLSM PETLNGFLVP EEDYFKWLKH MGSFKHSLFQ KAKNKFKPCL 60 TIEVSKKPRS GAFPTVQKAI NSLPVINNCR VVISISAGTY REKVEIPATM AYITLRGAGA 120 DRTIIEWDDT ADRMENGRPL GTFGSATFAV NSPYFIAKDI TFKNKAPLPP SGALGKQAVA 180 LRISADTAAF ISCKFIGAQD TLYDHIGRHY FKKCYIEGSV DFIFGNGLSL YEDCHLHAVT 240 TSFGALTAQK RQSFLEETGF SFVSCKVTGS GALFLGRAWG NFSRVVFAYT FMDKIITPRG 300 WYDWGDKSRQ MTVFFGQYKC SGPGADFGGR VAWSRELTDQ QAKPFISIGF IDGHEWLLNS 360 * |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02304 | PLN02304 | 7.0e-108 | 73 | 357 | 293 | + probable pectinesterase | ||
PLN02432 | PLN02432 | 8.0e-113 | 71 | 357 | 287 | + putative pectinesterase | ||
PLN02665 | PLN02665 | 2.0e-114 | 61 | 358 | 300 | + pectinesterase family protein | ||
PLN02634 | PLN02634 | 6.0e-116 | 70 | 357 | 290 | + probable pectinesterase | ||
PLN02682 | PLN02682 | 0 | 19 | 359 | 342 | + pectinesterase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI17409.1 | 0 | 1 | 359 | 4 | 363 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002266952.1 | 0 | 1 | 359 | 2 | 361 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002310842.1 | 0 | 33 | 360 | 12 | 339 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002330522.1 | 0 | 31 | 357 | 52 | 379 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002531506.1 | 0 | 25 | 360 | 29 | 367 | Pectinesterase-2 precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 0 | 70 | 357 | 16 | 308 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 1.99993e-41 | 70 | 357 | 12 | 304 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 3uw0_A | 1e-27 | 64 | 345 | 35 | 352 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
PDB | 2ntq_B | 5e-18 | 64 | 345 | 8 | 328 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
PDB | 2ntq_A | 5e-18 | 64 | 345 | 8 | 328 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |