Basic Information | |
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Species | Populus trichocarpa |
Cazyme ID | Potri.007G015700.2 |
Family | CE8 |
Protein Properties | Length: 340 Molecular Weight: 37774.3 Isoelectric Point: 9.5212 |
Chromosome | Chromosome/Scaffold: 07 Start: 1160229 End: 1165274 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 45 | 331 | 0 |
KKPRSGAFPTVQKAINSLPVINNCRVVISISAGTYREKVEIPATMAYITLRGAGADRTIIEWDDTADRMENGRPLGTFGSATFAVNSPYFIAKDITFKNK APLPPSGALGKQAVALRISADTAAFISCKFIGAQDTLYDHIGRHYFKKCYIEGSVDFIFGNGLSLYEDCHLHAVTTSFGALTAQKRQSFLEETGFSFVSC KVTGSGALFLGRAWGNFSRVVFAYTFMDKIITPRGWYDWGDKSRQMTVFFGQYKCSGPGADFGGRVAWSRELTDQQAKPFISIGFID |
Full Sequence |
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Protein Sequence Length: 340 Download |
MVSVDSMDYR IDYFKWLKHM GSFKHSLFQK AKNKFKPCLT IEVSKKPRSG AFPTVQKAIN 60 SLPVINNCRV VISISAGTYR EKVEIPATMA YITLRGAGAD RTIIEWDDTA DRMENGRPLG 120 TFGSATFAVN SPYFIAKDIT FKNKAPLPPS GALGKQAVAL RISADTAAFI SCKFIGAQDT 180 LYDHIGRHYF KKCYIEGSVD FIFGNGLSLY EDCHLHAVTT SFGALTAQKR QSFLEETGFS 240 FVSCKVTGSG ALFLGRAWGN FSRVVFAYTF MDKIITPRGW YDWGDKSRQM TVFFGQYKCS 300 GPGADFGGRV AWSRELTDQQ AKPFISIGFI DGHEWLLNS* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02304 | PLN02304 | 5.0e-108 | 52 | 336 | 293 | + probable pectinesterase | ||
PLN02432 | PLN02432 | 2.0e-112 | 50 | 336 | 287 | + putative pectinesterase | ||
PLN02665 | PLN02665 | 1.0e-114 | 40 | 337 | 300 | + pectinesterase family protein | ||
PLN02634 | PLN02634 | 1.0e-115 | 49 | 336 | 290 | + probable pectinesterase | ||
PLN02682 | PLN02682 | 0 | 1 | 338 | 339 | + pectinesterase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI17409.1 | 0 | 13 | 338 | 37 | 363 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002266952.1 | 0 | 13 | 338 | 35 | 361 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002310842.1 | 0 | 1 | 339 | 1 | 339 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002514210.1 | 0 | 10 | 336 | 54 | 381 | Pectinesterase PPE8B precursor, putative [Ricinus communis] |
RefSeq | XP_002531506.1 | 0 | 13 | 339 | 38 | 367 | Pectinesterase-2 precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 0 | 49 | 336 | 16 | 308 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 9.99967e-42 | 49 | 336 | 12 | 304 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 3uw0_A | 1e-27 | 43 | 324 | 35 | 352 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
PDB | 2ntq_B | 4e-18 | 43 | 324 | 8 | 328 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
PDB | 2ntq_A | 4e-18 | 43 | 324 | 8 | 328 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
DT570570 | 260 | 27 | 285 | 0 |
CK091865 | 216 | 125 | 340 | 0 |
JG062516 | 249 | 89 | 336 | 0 |
BU865435 | 210 | 81 | 290 | 0 |
DT759916 | 269 | 69 | 336 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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