| Basic Information | |
|---|---|
| Species | Populus trichocarpa |
| Cazyme ID | Potri.007G018600.5 |
| Family | AA4 |
| Protein Properties | Length: 361 Molecular Weight: 39247.9 Isoelectric Point: 7.1497 |
| Chromosome | Chromosome/Scaffold: 07 Start: 1430882 End: 1435329 |
| Description | FAD-linked oxidases family protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
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| Family | Start | End | Evalue |
| AA4 | 72 | 277 | 1.7e-24 |
| LSYFKGVLGEKNVVQDEDRLETANIDWMHKYKGSSKLLLLPRNTEEVSKILEYCNSRRLAVVPQGGNTGLVGGSVPVFDEVIINAGSMNKIIAFDKVSGI LVCEAGCILENLISYLDNQGFIMPLDLGAKGSCQIGGNVSTNAGGLRFVRYGSLHGNVLGLEAVLANGDVLDMLGTLRKDNTGYDLKHLFIGSEGSLGIV TKVSIL | |||
| Full Sequence |
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| Protein Sequence Length: 361 Download |
| MDKYKVTHRL LKQSIKSLVN RQLTSNNPIY RSISALPLGN GGRNPQLYRS FGSLATKVER 60 NPSFSSLNSD DLSYFKGVLG EKNVVQDEDR LETANIDWMH KYKGSSKLLL LPRNTEEVSK 120 ILEYCNSRRL AVVPQGGNTG LVGGSVPVFD EVIINAGSMN KIIAFDKVSG ILVCEAGCIL 180 ENLISYLDNQ GFIMPLDLGA KGSCQIGGNV STNAGGLRFV RYGSLHGNVL GLEAVLANGD 240 VLDMLGTLRK DNTGYDLKHL FIGSEGSLGI VTKVSILTPP KLSSVNIAFL ACEDYLSCQK 300 LLSEAKRKLG EILSAFEFLD SHAMDLVLNH LEGVRNPLPS AVHNFYVLIE TTGSDESYDK 360 * |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PRK11230 | PRK11230 | 3.0e-27 | 84 | 315 | 234 | + glycolate oxidase subunit GlcD; Provisional | ||
| PLN02805 | PLN02805 | 3.0e-30 | 8 | 276 | 294 | + D-lactate dehydrogenase [cytochrome] | ||
| pfam01565 | FAD_binding_4 | 1.0e-35 | 107 | 243 | 137 | + FAD binding domain. This family consists of various enzymes that use FAD as a co-factor, most of the enzymes are similar to oxygen oxidoreductase. One of the enzymes Vanillyl-alcohol oxidase (VAO) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyzes the oxidation of a wide variety of substrates, ranging form aromatic amines to 4-alkylphenols. Other members of this family include D-lactate dehydrogenase, this enzyme catalyzes the conversion of D-lactate to pyruvate using FAD as a co-factor; mitomycin radical oxidase, this enzyme oxidises the reduced form of mitomycins and is involved in mitomycin resistance. This family includes MurB an UDP-N-acetylenolpyruvoylglucosamine reductase enzyme EC:1.1.1.158. This enzyme is involved in the biosynthesis of peptidoglycan. | ||
| TIGR00387 | glcD | 4.0e-49 | 110 | 321 | 220 | + glycolate oxidase, subunit GlcD. This protein, the glycolate oxidase GlcD subunit, is similar in sequence to that of several D-lactate dehydrogenases, including that of E. coli. The glycolate oxidase has been found to have some D-lactate dehydrogenase activity [Energy metabolism, Other]. | ||
| COG0277 | GlcD | 5.0e-71 | 74 | 356 | 286 | + FAD/FMN-containing dehydrogenases [Energy production and conversion] | ||
| Gene Ontology | |
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| GO Term | Description |
| GO:0003824 | catalytic activity |
| GO:0008762 | UDP-N-acetylmuramate dehydrogenase activity |
| GO:0016491 | oxidoreductase activity |
| GO:0050660 | flavin adenine dinucleotide binding |
| GO:0055114 | oxidation-reduction process |
| Annotations - NR Download unfiltered results here | |||||||
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| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CAB16815.1 | 0 | 46 | 360 | 41 | 355 | actin interacting protein [Arabidopsis thaliana] |
| RefSeq | NP_568003.2 | 0 | 46 | 360 | 73 | 387 | FAD linked oxidase family protein [Arabidopsis thaliana] |
| RefSeq | XP_002268002.1 | 0 | 49 | 360 | 68 | 379 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002310828.1 | 0 | 1 | 360 | 1 | 360 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002521506.1 | 0 | 48 | 360 | 81 | 393 | d-lactate dehydrognease 2, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
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| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3pm9_F | 0 | 66 | 350 | 12 | 294 | A Chain A, Crystal Structure Of A Putative Dehydrogenase (Rpa1076) From Rhodopseudomonas Palustris Cga009 At 2.57 A Resolution |
| PDB | 3pm9_E | 0 | 66 | 350 | 12 | 294 | A Chain A, Crystal Structure Of A Putative Dehydrogenase (Rpa1076) From Rhodopseudomonas Palustris Cga009 At 2.57 A Resolution |
| PDB | 3pm9_D | 0 | 66 | 350 | 12 | 294 | A Chain A, Crystal Structure Of A Putative Dehydrogenase (Rpa1076) From Rhodopseudomonas Palustris Cga009 At 2.57 A Resolution |
| PDB | 3pm9_C | 0 | 66 | 350 | 12 | 294 | A Chain A, Crystal Structure Of A Putative Dehydrogenase (Rpa1076) From Rhodopseudomonas Palustris Cga009 At 2.57 A Resolution |
| PDB | 3pm9_B | 0 | 66 | 350 | 12 | 294 | A Chain A, Crystal Structure Of A Putative Dehydrogenase (Rpa1076) From Rhodopseudomonas Palustris Cga009 At 2.57 A Resolution |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| CO071363 | 267 | 94 | 360 | 0 |
| CO071824 | 267 | 94 | 360 | 0 |
| CB662072 | 286 | 75 | 360 | 0 |
| ES812965 | 303 | 2 | 289 | 0 |
| ES812965 | 60 | 296 | 354 | 0.1 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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