Basic Information | |
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Species | Populus trichocarpa |
Cazyme ID | Potri.007G035800.1 |
Family | GH28 |
Protein Properties | Length: 392 Molecular Weight: 42348.1 Isoelectric Point: 7.2259 |
Chromosome | Chromosome/Scaffold: 07 Start: 2763669 End: 2765124 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 48 | 381 | 0 |
EDACASTSPSKVLIPRGTYLLGPVIISGPCKAAIELQVKGKLQAPVDMREFEGFSSWITLNYVDQFTLTGGGTFDGQGKSASNQNNCGKDKHCKLPPVSL KFNFITNGIVHDITSTDSKYFHAHLLGCKNLTFQHFTITAHDESLNTDGIHIGRSKDIKIIDSDIGTGDDCISLGHGSRQITIEGVTCAPGHGISIGSLG KSQNEESVSGIFVKNCTISNTQNGVRIKSWPALFGGSASDIHFEDIIMKNVSNPIVIDQVYCPWNECNRKSASKVSIKNVSFKNIRGTSRTPVAVQLSCS KDIPCDEVEVADIDLKYTGSEGPAKFQCSNVQPK |
Full Sequence |
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Protein Sequence Length: 392 Download |
MGLKVNVSAI FLLLFLTSTD VKAENVVFDV TKYGDEEDIS KAFKSAWEDA CASTSPSKVL 60 IPRGTYLLGP VIISGPCKAA IELQVKGKLQ APVDMREFEG FSSWITLNYV DQFTLTGGGT 120 FDGQGKSASN QNNCGKDKHC KLPPVSLKFN FITNGIVHDI TSTDSKYFHA HLLGCKNLTF 180 QHFTITAHDE SLNTDGIHIG RSKDIKIIDS DIGTGDDCIS LGHGSRQITI EGVTCAPGHG 240 ISIGSLGKSQ NEESVSGIFV KNCTISNTQN GVRIKSWPAL FGGSASDIHF EDIIMKNVSN 300 PIVIDQVYCP WNECNRKSAS KVSIKNVSFK NIRGTSRTPV AVQLSCSKDI PCDEVEVADI 360 DLKYTGSEGP AKFQCSNVQP KFHGKINPSK C* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 5.0e-63 | 27 | 391 | 371 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 2.0e-70 | 38 | 391 | 358 | + Probable polygalacturonase | ||
PLN02155 | PLN02155 | 3.0e-77 | 5 | 391 | 391 | + polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 5.0e-99 | 51 | 378 | 328 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 2.0e-116 | 7 | 391 | 395 | + polygalacturonase/glycoside hydrolase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
DDBJ | BAA89476.1 | 0 | 1 | 391 | 1 | 393 | polygalacturonase [Salix gilgiana] |
DDBJ | BAA89477.1 | 0 | 1 | 391 | 1 | 393 | polygalacturonase [Salix gilgiana] |
DDBJ | BAA89478.1 | 0 | 1 | 391 | 1 | 393 | polygalacturonase [Salix gilgiana] |
DDBJ | BAA89479.1 | 0 | 1 | 391 | 1 | 393 | polygalacturonase [Salix gilgiana] |
RefSeq | XP_002310765.1 | 0 | 1 | 391 | 1 | 391 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1rmg_A | 9e-17 | 16 | 362 | 9 | 338 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
PDB | 1bhe_A | 3e-16 | 66 | 328 | 52 | 334 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1czf_B | 0.00000000000004 | 166 | 357 | 127 | 344 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
PDB | 1czf_A | 0.00000000000004 | 166 | 357 | 127 | 344 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
PDB | 1nhc_F | 0.0000000000004 | 177 | 378 | 132 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |