Basic Information | |
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Species | Populus trichocarpa |
Cazyme ID | Potri.007G099800.2 |
Family | GH35 |
Protein Properties | Length: 795 Molecular Weight: 88788.7 Isoelectric Point: 6.3838 |
Chromosome | Chromosome/Scaffold: 07 Start: 12563535 End: 12573962 |
Description | beta-galactosidase 10 |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH35 | 3 | 285 | 0 |
QMWPELVKTAKEGGVDVIETYVFWNVHQPTSPSEYHFDGRFDLVKFINIVQEAGMYLILRIGPFVAAEWNFGGIPVWLHYVNGTVFRTDNYNFKYYMEEF TTYIVKLMKKEKLFASQGGPIILSQVENEYGYYEGAYGEGGKRYAAWAAQMAVSQNTGVPWIMCQQFDAPPSVINTCNSFYCDQFKPIFPDKPKIWTENW PGWFQTFGAPNPHRPAEDVAFSVARFFQKGGSVQNYYMYHGGTNFGRTAGGPFITTSYDYEAPIDEYGLPRLPKWGHLKELHK |
Full Sequence |
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Protein Sequence Length: 795 Download |
MWQMWPELVK TAKEGGVDVI ETYVFWNVHQ PTSPSEYHFD GRFDLVKFIN IVQEAGMYLI 60 LRIGPFVAAE WNFGGIPVWL HYVNGTVFRT DNYNFKYYME EFTTYIVKLM KKEKLFASQG 120 GPIILSQVEN EYGYYEGAYG EGGKRYAAWA AQMAVSQNTG VPWIMCQQFD APPSVINTCN 180 SFYCDQFKPI FPDKPKIWTE NWPGWFQTFG APNPHRPAED VAFSVARFFQ KGGSVQNYYM 240 YHGGTNFGRT AGGPFITTSY DYEAPIDEYG LPRLPKWGHL KELHKAIKLC EHVLLNSKPV 300 NLSLGPSQEA DVYADASGGC VAFLANIDDK NDKTVDFQNV SFKLPAWSVS ILPDCKNVVY 360 NTAKVTSQTA LVEMVPDNLQ QKDGSKALKW EVFVEKAGIW GEPDFMKNGF VDHINTTKDT 420 TDYLWYTTSI VVGENEEFLK EGRHPVLLIE SMGHALHAFV NQELQGSASG NGSHSPFKFK 480 NPISLKAGNN EIALLSMTVG LPNAGSFYEW VGAGLTSVRI EGFNNGTVDL SHFNWIYKIG 540 LQGEKLGIYK PEGVNSVSWV ATSEPPKKQP LTWYKVVLDP PAGNEPVGLD MLHMGKGLAW 600 LNGEEIGRYW PRKSSVHEKC VTECDYRGKF MPDKCFTGCG QPTQRWYHVP RSWFKPSGNL 660 LVIFEEKGGD PEKITFSRRK MSSICALIAE DYPSADRKSL QEAGSKNSNS KASVHLGCPQ 720 NAVISAVKFA SFGTPTGKCG SYSEGECHDP NSISVVEKAC LNKTECTIEL TEENFNKGLC 780 PDFTRRLAVE AVCS* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG1874 | LacA | 8.0e-12 | 4 | 277 | 334 | + Beta-galactosidase [Carbohydrate transport and metabolism] | ||
pfam02140 | Gal_Lectin | 2.0e-16 | 716 | 793 | 82 | + Galactose binding lectin domain. | ||
pfam01301 | Glyco_hydro_35 | 1.0e-132 | 3 | 287 | 300 | + Glycosyl hydrolases family 35. | ||
PLN03059 | PLN03059 | 0 | 3 | 794 | 795 | + beta-galactosidase; Provisional |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005529 | Interacting selectively and non-covalently with any carbohydrate, which includes monosaccharides, oligosaccharides and polysaccharides as well as substances derived from monosaccharides by reduction of the carbonyl group (alditols), by oxidation of one or more hydroxy groups to afford the corresponding aldehydes, ketones, or carboxylic acids, or by replacement of one or more hydroxy group(s) by a hydrogen atom. Cyclitols are generally not regarded as carbohydrates." [CHEBI:16646, GOC:mah] |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAF70823.1 | 0 | 4 | 794 | 76 | 870 | AF154422_1 beta-galactosidase [Solanum lycopersicum] |
DDBJ | BAD91080.1 | 0 | 3 | 794 | 58 | 851 | beta-D-galactosidase [Pyrus pyrifolia] |
EMBL | CBI21600.1 | 0 | 4 | 794 | 53 | 847 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002310540.1 | 0 | 4 | 794 | 51 | 827 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002522927.1 | 0 | 4 | 794 | 59 | 803 | beta-galactosidase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3d3a_A | 3e-37 | 3 | 283 | 37 | 325 | A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides Thetaiotaomicron |
PDB | 4e8d_B | 3e-30 | 5 | 272 | 34 | 315 | A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides Thetaiotaomicron |
PDB | 4e8d_A | 3e-30 | 5 | 272 | 34 | 315 | A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides Thetaiotaomicron |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
lactose degradation III | BETAGALACTOSID-RXN | EC-3.2.1.23 | β-galactosidase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
HO778160 | 684 | 3 | 683 | 0 |
HO780602 | 671 | 24 | 684 | 0 |
CV276560 | 254 | 542 | 795 | 0 |
HO795552 | 529 | 65 | 591 | 0 |
HO795552 | 41 | 25 | 65 | 0.00000000000008 |
Sequence Alignments (This image is cropped. Click for full image.) |
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