Basic Information | |
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Species | Populus trichocarpa |
Cazyme ID | Potri.007G105800.1 |
Family | GH28 |
Protein Properties | Length: 499 Molecular Weight: 54426 Isoelectric Point: 7.1556 |
Chromosome | Chromosome/Scaffold: 07 Start: 13002911 End: 13007361 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 120 | 460 | 0 |
SGGAQLNVPKGRWVTGSFNLTSNFTLFLEEGAVILGSQDPKEWPIIEPLPSYGRGRERLGGRHISLVHGDGLTNVVITGNNGTIDGQGKMWWELWWNRTL EHTRGHLVELMNSNNILIANLTFCNAPFWTIHPVYCSNVVVKDMTILAPLKAPNTDGIDPDSSTNVCIEDCYIESGDDLVAVKSGWDQYGIKMARPSSNI VVRRVSGTTPTCSGVGIGSEMSGGIFNITIEDLHVWDSAAGVRIKTDNGRGGYIANITISNVTMERVKVPIRFSRGSNDHPDEGWDPKAVPVVKGISIRN VISFNSTKAPVLEGVEDAPFGGICMKNVSLLGVVSSLSWHC |
Full Sequence |
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Protein Sequence Length: 499 Download |
MLKKMDFDEK QSFGFGGNAM IAKVSRFSWS PFLFLITLIA LLSFQITTKT IYPMKIAFSS 60 TSKTGVSADA RTSCVGFFGE LPERKAVMSI REFGGVGDGK TSNTETFRKA IRYLQRFGES 120 GGAQLNVPKG RWVTGSFNLT SNFTLFLEEG AVILGSQDPK EWPIIEPLPS YGRGRERLGG 180 RHISLVHGDG LTNVVITGNN GTIDGQGKMW WELWWNRTLE HTRGHLVELM NSNNILIANL 240 TFCNAPFWTI HPVYCSNVVV KDMTILAPLK APNTDGIDPD SSTNVCIEDC YIESGDDLVA 300 VKSGWDQYGI KMARPSSNIV VRRVSGTTPT CSGVGIGSEM SGGIFNITIE DLHVWDSAAG 360 VRIKTDNGRG GYIANITISN VTMERVKVPI RFSRGSNDHP DEGWDPKAVP VVKGISIRNV 420 ISFNSTKAPV LEGVEDAPFG GICMKNVSLL GVVSSLSWHC EFVSGFADEV FPTPCPQLQS 480 NISSSWCSYS WASSVNLN* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03010 | PLN03010 | 5.0e-21 | 190 | 390 | 209 | + polygalacturonase | ||
PLN02218 | PLN02218 | 7.0e-26 | 83 | 446 | 385 | + polygalacturonase ADPG | ||
PLN03003 | PLN03003 | 1.0e-26 | 77 | 413 | 349 | + Probable polygalacturonase At3g15720 | ||
pfam00295 | Glyco_hydro_28 | 8.0e-31 | 180 | 430 | 259 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
COG5434 | PGU1 | 3.0e-61 | 85 | 435 | 375 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI37530.1 | 0 | 49 | 487 | 40 | 476 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002274138.1 | 0 | 49 | 487 | 40 | 476 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002307030.1 | 0 | 88 | 479 | 1 | 392 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002310517.1 | 0 | 54 | 498 | 1 | 445 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002526639.1 | 0 | 49 | 490 | 36 | 480 | polygalacturonase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 6.99949e-42 | 80 | 462 | 22 | 421 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 6.99949e-42 | 80 | 462 | 22 | 421 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 6.99949e-42 | 80 | 462 | 22 | 421 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 6.99949e-42 | 80 | 462 | 22 | 421 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 1bhe_A | 5e-23 | 132 | 464 | 52 | 373 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |