Basic Information | |
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Species | Populus trichocarpa |
Cazyme ID | Potri.007G116800.2 |
Family | GT47 |
Protein Properties | Length: 363 Molecular Weight: 42588.1 Isoelectric Point: 8.0176 |
Chromosome | Chromosome/Scaffold: 07 Start: 13745787 End: 13748021 |
Description | Exostosin family protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GT47 | 26 | 315 | 0 |
ENDFKVFVYPGRDPTTCYDPRDKLKRKYASEHYFLKNLIPSSFFTDDPTVAHLFLIPLSCKKTGGREKDIENYVKSLISSYPYWNRTLGADHFYFSCHGI DSGTIEEVPLLMKNVIRLVCSPSYDSKYIPHKDISLPQTLELSLHDGDDVWSRSTVMSRPLMIYPEMMLPRRTKLGFWAGSLNSDVRKNLQVFYKGAPEF NFHFFDKMKKAAILDAYENELYGSKFCICPRGNNHVGSVCLTESMTFGCVPVILHDYYDFPFNDVLDWNNFSVILKEEHVPDLEKILKGI |
Full Sequence |
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Protein Sequence Length: 363 Download |
MVFKGNSIGS IYHREDFFLP NYATMENDFK VFVYPGRDPT TCYDPRDKLK RKYASEHYFL 60 KNLIPSSFFT DDPTVAHLFL IPLSCKKTGG REKDIENYVK SLISSYPYWN RTLGADHFYF 120 SCHGIDSGTI EEVPLLMKNV IRLVCSPSYD SKYIPHKDIS LPQTLELSLH DGDDVWSRST 180 VMSRPLMIYP EMMLPRRTKL GFWAGSLNSD VRKNLQVFYK GAPEFNFHFF DKMKKAAILD 240 AYENELYGSK FCICPRGNNH VGSVCLTESM TFGCVPVILH DYYDFPFNDV LDWNNFSVIL 300 KEEHVPDLEK ILKGIPEENY KKMHQNLLQV RKHFQWNSLP VKYDLFRMIM YELWLRRHII 360 KY* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam03016 | Exostosin | 5.0e-46 | 25 | 315 | 310 | + Exostosin family. The EXT family is a family of tumour suppressor genes. Mutations of EXT1 on 8q24.1, EXT2 on 11p11-13, and EXT3 on 19p have been associated with the autosomal dominant disorder known as hereditary multiple exostoses (HME). This is the most common known skeletal dysplasia. The chromosomal locations of other EXT genes suggest association with other forms of neoplasia. EXT1 and EXT2 have both been shown to encode a heparan sulphate polymerase with both D-glucuronyl (GlcA) and N-acetyl-D-glucosaminoglycan (GlcNAC) transferase activities. The nature of the defect in heparan sulphate biosynthesis in HME is unclear. |
Gene Ontology | |
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GO Term | Description |
GO:0016020 | membrane |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | XP_002266299.1 | 0 | 11 | 362 | 77 | 416 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002268836.1 | 0 | 6 | 362 | 73 | 417 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002307304.1 | 0 | 3 | 362 | 59 | 406 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002309859.1 | 0 | 4 | 362 | 61 | 420 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002321656.1 | 0 | 6 | 362 | 42 | 407 | predicted protein [Populus trichocarpa] |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
xylogalacturonan biosynthesis | RXN-9589 | EC-2.4.2.41 | xylogalacturonan β-1,3-xylosyltransferase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
EG459159 | 271 | 95 | 363 | 0 |
EX317869 | 295 | 52 | 338 | 0 |
CX077756 | 270 | 95 | 362 | 0 |
GT034064 | 269 | 96 | 363 | 0 |
EH770778 | 300 | 37 | 327 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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