y
Basic Information | |
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Species | Populus trichocarpa |
Cazyme ID | Potri.007G118100.1 |
Family | GT47 |
Protein Properties | Length: 360 Molecular Weight: 42096.4 Isoelectric Point: 7.2571 |
Chromosome | Chromosome/Scaffold: 07 Start: 13797775 End: 13799325 |
Description | Exostosin family protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GT47 | 2 | 312 | 0 |
ERSFEVFVYPHKTTACDKTRKIDGKYGSEGFFYQNLNQRRFLTRDPDKANLFLIPTSCHSLPAEGRSVDERAIAVQHFVNSLISEYPYWNRTLGADHFFI TCADIHVIASERIWNLMKNSIRVMCSPSYNVEYVPHKDVSLPQSVQPFNVSVSQIMPPLYAFIAPTTQPLTLPAAKYNMKSRYRYLLCPWIILEQEYSFW RGLKENYIRKSLVNAWENDSELDIKEIQTEASTTEIRRLYHEKFYSSKFCICPGGPQIDGAIAVAIHYGCVPVIMSDYFDLPFNDILDWKKFSVILKESD VDGLKRILLNI |
Full Sequence |
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Protein Sequence Length: 360 Download |
MERSFEVFVY PHKTTACDKT RKIDGKYGSE GFFYQNLNQR RFLTRDPDKA NLFLIPTSCH 60 SLPAEGRSVD ERAIAVQHFV NSLISEYPYW NRTLGADHFF ITCADIHVIA SERIWNLMKN 120 SIRVMCSPSY NVEYVPHKDV SLPQSVQPFN VSVSQIMPPL YAFIAPTTQP LTLPAAKYNM 180 KSRYRYLLCP WIILEQEYSF WRGLKENYIR KSLVNAWEND SELDIKEIQT EASTTEIRRL 240 YHEKFYSSKF CICPGGPQID GAIAVAIHYG CVPVIMSDYF DLPFNDILDW KKFSVILKES 300 DVDGLKRILL NIPDQEYQVL QTNTVMVQDH FQWNLPPVRL DTFHMVMYEL WLRRYVTKY* 360 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam03016 | Exostosin | 7.0e-39 | 1 | 312 | 335 | + Exostosin family. The EXT family is a family of tumour suppressor genes. Mutations of EXT1 on 8q24.1, EXT2 on 11p11-13, and EXT3 on 19p have been associated with the autosomal dominant disorder known as hereditary multiple exostoses (HME). This is the most common known skeletal dysplasia. The chromosomal locations of other EXT genes suggest association with other forms of neoplasia. EXT1 and EXT2 have both been shown to encode a heparan sulphate polymerase with both D-glucuronyl (GlcA) and N-acetyl-D-glucosaminoglycan (GlcNAC) transferase activities. The nature of the defect in heparan sulphate biosynthesis in HME is unclear. |
Gene Ontology | |
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GO Term | Description |
GO:0016020 | membrane |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI38234.1 | 0 | 1 | 359 | 1 | 326 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002266299.1 | 0 | 1 | 359 | 91 | 416 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002268836.1 | 0 | 1 | 359 | 92 | 417 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002309856.1 | 0 | 1 | 359 | 1 | 325 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002338879.1 | 0 | 66 | 273 | 1 | 208 | predicted protein [Populus trichocarpa] |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
xylogalacturonan biosynthesis | RXN-9589 | EC-2.4.2.41 | xylogalacturonan β-1,3-xylosyltransferase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
EX317869 | 313 | 25 | 336 | 0 |
EG459159 | 300 | 62 | 360 | 0 |
EH770778 | 304 | 21 | 323 | 0 |
GT006581 | 286 | 76 | 360 | 0 |
CX077756 | 285 | 76 | 359 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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