y
Basic Information | |
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Species | Populus trichocarpa |
Cazyme ID | Potri.007G144400.1 |
Family | GH28 |
Protein Properties | Length: 392 Molecular Weight: 40420.6 Isoelectric Point: 7.0102 |
Chromosome | Chromosome/Scaffold: 07 Start: 15412585 End: 15414556 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 49 | 378 | 0 |
AWSQACASTQPATISVPKGSFALGQVRFQGPCKNNAILVRIDGTLLAPSDYGVLGRAQNWLIFEHVNGVTISGGTLDGQGAGLWSCKNSGKDCPSGATSL EFSNSNNIAITGLASLNSQMFHIVINACQDVKVQGVRVSAAGDSPNTDGIHVQSSTGVTILNSRIGTGDDCVSIGPGTSNLWIENVACGPGHGISIGSLG KDSQEAGVQNVTVKTTTFTGTENGVRIKTWGRPSSGFARNILFQHAVMTNVQNPIVIDQNYCPGEKGCPGQVSGVKISDVTYQDIHGSSATELAVKFDCS KTNPCSGIKLEDVKLTYNNQPAEASCSNAG |
Full Sequence |
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Protein Sequence Length: 392 Download |
MAVLPLLIAL LSIIFFASSP LAKAAQYSVL SYGAMPDGKT DSTKAFAAAW SQACASTQPA 60 TISVPKGSFA LGQVRFQGPC KNNAILVRID GTLLAPSDYG VLGRAQNWLI FEHVNGVTIS 120 GGTLDGQGAG LWSCKNSGKD CPSGATSLEF SNSNNIAITG LASLNSQMFH IVINACQDVK 180 VQGVRVSAAG DSPNTDGIHV QSSTGVTILN SRIGTGDDCV SIGPGTSNLW IENVACGPGH 240 GISIGSLGKD SQEAGVQNVT VKTTTFTGTE NGVRIKTWGR PSSGFARNIL FQHAVMTNVQ 300 NPIVIDQNYC PGEKGCPGQV SGVKISDVTY QDIHGSSATE LAVKFDCSKT NPCSGIKLED 360 VKLTYNNQPA EASCSNAGGV ASGVVQPTSC L* 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 4.0e-82 | 28 | 387 | 367 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 3.0e-83 | 29 | 391 | 372 | + Probable polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 4.0e-88 | 56 | 377 | 325 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 2.0e-96 | 27 | 390 | 370 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02155 | PLN02155 | 3.0e-126 | 27 | 391 | 366 | + polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | XP_002309716.1 | 0 | 1 | 391 | 1 | 391 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002310385.1 | 0 | 1 | 391 | 1 | 397 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002331621.1 | 0 | 1 | 391 | 1 | 396 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002331659.1 | 0 | 5 | 391 | 3 | 389 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002331662.1 | 0 | 5 | 391 | 3 | 389 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1czf_B | 4e-21 | 112 | 374 | 95 | 362 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
PDB | 1czf_A | 4e-21 | 112 | 374 | 95 | 362 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
PDB | 1bhe_A | 1e-20 | 122 | 364 | 117 | 362 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 2iq7_G | 2e-20 | 113 | 376 | 71 | 330 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 2e-20 | 113 | 376 | 71 | 330 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |