Basic Information | |
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Species | Populus trichocarpa |
Cazyme ID | Potri.007G145300.1 |
Family | GH28 |
Protein Properties | Length: 391 Molecular Weight: 41742.8 Isoelectric Point: 9.9984 |
Chromosome | Chromosome/Scaffold: 07 Start: 15470919 End: 15472833 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 50 | 378 | 0 |
WSAACRSATPSTIYVPKGRYLLKAIVFRGPCKNKITVQIGGTLIAPTDYRALGNSGYWILFIETNRVSVFGGTLDAKGAGFWACRKSRQNCPVGAASITF NWANDILISGLTSINSQSTHLVINSCKKVVVRNVRTIAPDQSPNTDGIHVQASTGVSITGSTLQTGDDCISIGPGTRNMLMSGIKCGPGHGISIGSLGKE FNEDGVENIMVTNSVFSGSDNGVRIKSWARPSNGFVRKVVYKNLIMKNVQNPIIIDQNYCPDNKGCPRQTSGVKISQVIYKNIQGTSATAEAVTFDCSPS NPCRGIRLQDIRLTYKNKAATSSCKNVGG |
Full Sequence |
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Protein Sequence Length: 391 Download |
MAKFVVSFVV LSFFYSFHLS NAASTTHNVI KFGAKPDGKT DATQPFLKAW SAACRSATPS 60 TIYVPKGRYL LKAIVFRGPC KNKITVQIGG TLIAPTDYRA LGNSGYWILF IETNRVSVFG 120 GTLDAKGAGF WACRKSRQNC PVGAASITFN WANDILISGL TSINSQSTHL VINSCKKVVV 180 RNVRTIAPDQ SPNTDGIHVQ ASTGVSITGS TLQTGDDCIS IGPGTRNMLM SGIKCGPGHG 240 ISIGSLGKEF NEDGVENIMV TNSVFSGSDN GVRIKSWARP SNGFVRKVVY KNLIMKNVQN 300 PIIIDQNYCP DNKGCPRQTS GVKISQVIYK NIQGTSATAE AVTFDCSPSN PCRGIRLQDI 360 RLTYKNKAAT SSCKNVGGTS AGVLMPESCV * |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam00295 | Glyco_hydro_28 | 8.0e-88 | 54 | 376 | 329 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 9.0e-92 | 23 | 387 | 372 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 6.0e-101 | 29 | 389 | 370 | + Probable polygalacturonase | ||
PLN02188 | PLN02188 | 5.0e-107 | 22 | 389 | 374 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02155 | PLN02155 | 1.0e-176 | 22 | 390 | 370 | + polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | XP_002309713.1 | 0 | 1 | 390 | 1 | 390 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002331633.1 | 0 | 1 | 390 | 1 | 390 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002331634.1 | 0 | 1 | 390 | 1 | 390 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002529097.1 | 0 | 3 | 390 | 4 | 388 | Polygalacturonase precursor, putative [Ricinus communis] |
RefSeq | XP_002529098.1 | 0 | 1 | 390 | 1 | 387 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2iq7_G | 4e-20 | 120 | 376 | 77 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 4e-20 | 120 | 376 | 77 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_E | 4e-20 | 120 | 376 | 77 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_D | 4e-20 | 120 | 376 | 77 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_C | 4e-20 | 120 | 376 | 77 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |