| Basic Information | |
|---|---|
| Species | Populus trichocarpa |
| Cazyme ID | Potri.008G028900.1 |
| Family | GT64 |
| Protein Properties | Length: 790 Molecular Weight: 89560.2 Isoelectric Point: 8.9279 |
| Chromosome | Chromosome/Scaffold: 08 Start: 1555218 End: 1560501 |
| Description | glycosyltransferase family protein 47 |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GT64 | 543 | 777 | 0 |
| FTLLTMTYDARLWNLKMYVKHYSRCSSVKEIIVVWNKGRPPRSSDLDSAVPVWIRVEDQNSLNNRFKRDPMLKTRAVLELDDDIMMTCDDIERGFNVWRQ HPDRIVGFYPRLISGSPLKYRGEKYARHHKGYNMILTGAAFMDHTVAFERYWSKEAKAGRELVDRYFNCEDVLLNYLYANASSSQTVEYVRPAWAIDTSK FSGVAISRNTNVHYKIRSNCLLKFSEIYGSIAGRK | |||
| Full Sequence |
|---|
| Protein Sequence Length: 790 Download |
| MGVYEAGGNG SNGTTTATTC NCCDMSLRCW CRWKWGNHQQ QQQPQQNHHN LLHQRLVSLV 60 FSSGFMFFLG CLVLYGSIGM FYGWLVFSKP YSRSTNVGVG LNSLGCQEDN EGSWSIGVFY 120 GDSPFSLKPI EAMNEWRDEG VAWPVANPVV TCASLSDANF PSNFVADPFL YVQGDTLFLF 180 YETKNSITMQ GDIAVAKSMD KGATWQQLGI ALDEDWHLSY PYVFNYLGQI YMMPESSQKG 240 ELRLYRALNF PLQWTLEKVL IKKPLVDSFI INHAGIYWLF GSDHSGFGTR RNGQLEIWYS 300 SSPLGPWKPH KKNPIYNVDK SVGARNGGRP FVYDGNLYRV GQDCGETYGR RVRIFKVEVL 360 TMDDYKEVEV PLGFEEPNKG RNAWNGARYH HLDVQHLSSG KWIAVMDGDR VPSGDPVHRF 420 ILGSASLAAV TVVAVVLGVL LGAVKCIIPL SWCAHYSGKR NNALLGRERS NLFSSKVRRF 480 CSRLNRVPLS VRGKIKPNTW AGKLVLAVTI VVGVALMCTG VKYFYGGNDA EEAYPLNGHY 540 SQFTLLTMTY DARLWNLKMY VKHYSRCSSV KEIIVVWNKG RPPRSSDLDS AVPVWIRVED 600 QNSLNNRFKR DPMLKTRAVL ELDDDIMMTC DDIERGFNVW RQHPDRIVGF YPRLISGSPL 660 KYRGEKYARH HKGYNMILTG AAFMDHTVAF ERYWSKEAKA GRELVDRYFN CEDVLLNYLY 720 ANASSSQTVE YVRPAWAIDT SKFSGVAISR NTNVHYKIRS NCLLKFSEIY GSIAGRKWEF 780 DGRKDGWDL* 840 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| cd08978 | GH_F | 0.008 | 138 | 354 | 237 | + Glycosyl hydrolase families 43 and 62 form CAZY clan GH-F. This glycosyl hydrolase clan F (according to carbohydrate-active enzymes database (CAZY)) includes family 43 (GH43) and 62 (GH62). GH43 includes enzymes with beta-xylosidase (EC 3.2.1.37), beta-1,3-xylosidase (EC 3.2.1.-), alpha-L-arabinofuranosidase (EC 3.2.1.55), arabinanase (EC 3.2.1.99), xylanase (EC 3.2.1.8), endo-alpha-L-arabinanases (beta-xylanases) and galactan 1,3-beta-galactosidase (EC 3.2.1.145) activities. GH62 includes enzymes characterized as arabinofuranosidases (alpha-L-arabinofuranosidases; EC 3.2.1.55) that specifically cleave either alpha-1,2 or alpha-1,3-L-arabinofuranose side chains from xylans. GH43 are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. GH62 are also predicted to be inverting enzymes. A common structural feature of both, GH43 and GH62 enzymes, is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extended substrate-binding surface across the face of the propeller. | ||
| pfam09258 | Glyco_transf_64 | 1.0e-72 | 543 | 771 | 231 | + Glycosyl transferase family 64 domain. Members of this family catalyze the transfer reaction of N-acetylglucosamine and N-acetylgalactosamine from the respective UDP-sugars to the non-reducing end of [glucuronic acid]beta 1-3[galactose]beta 1-O-naphthalenemethanol, an acceptor substrate analog of the natural common linker of various glycosylaminoglycans. They are also required for the biosynthesis of heparan-sulphate. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0016758 | transferase activity, transferring hexosyl groups |
| GO:0031227 | intrinsic to endoplasmic reticulum membrane |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CAB85556.1 | 0 | 36 | 789 | 9 | 764 | putative protein [Arabidopsis thaliana] |
| RefSeq | XP_002262646.1 | 0 | 101 | 789 | 68 | 756 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002315348.1 | 0 | 1 | 190 | 1 | 185 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002315348.1 | 0 | 174 | 789 | 232 | 847 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002532924.1 | 0 | 86 | 789 | 1 | 704 | transferase, transferring glycosyl groups, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1on8_B | 4e-24 | 531 | 770 | 18 | 267 | A Chain A, The Structure Of A Protein In Glycosyl Transferase Family 8 From Anaerococcus Prevotii. |
| PDB | 1on8_A | 4e-24 | 531 | 770 | 18 | 267 | A Chain A, The Structure Of A Protein In Glycosyl Transferase Family 8 From Anaerococcus Prevotii. |
| PDB | 1on6_B | 4e-24 | 531 | 770 | 18 | 267 | A Chain A, The Structure Of A Protein In Glycosyl Transferase Family 8 From Anaerococcus Prevotii. |
| PDB | 1on6_A | 4e-24 | 531 | 770 | 18 | 267 | A Chain A, The Structure Of A Protein In Glycosyl Transferase Family 8 From Anaerococcus Prevotii. |
| PDB | 1omz_B | 4e-24 | 531 | 770 | 18 | 267 | A Chain A, The Structure Of A Protein In Glycosyl Transferase Family 8 From Anaerococcus Prevotii. |
