Basic Information | |
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Species | Populus trichocarpa |
Cazyme ID | Potri.008G032700.1 |
Family | PL1 |
Protein Properties | Length: 502 Molecular Weight: 54284.9 Isoelectric Point: 6.4184 |
Chromosome | Chromosome/Scaffold: 08 Start: 1800368 End: 1805427 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 134 | 338 | 0 |
QDQPLWIIFSSDMVIKLKHELIFNSYKTIDGRGANVHITGNGCITLQHVTHIIIHNIHVHHCKPSGNTNIASSPTHVGQRGESDGDGISISGSQKIWIDH CSLSYCTDGLIDAILGSTAITISNNHFTHHNEVMLLGHNDKYVLDSGMQVTIAFNHFGVGLVQRMPRCRRGYIHVVNNDFTAWEMYAIGGSANPTINSQG NRYTA |
Full Sequence |
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Protein Sequence Length: 502 Download |
MKLSNFCVLL ICHFTSFIPF IIETTAFNLT LPHQHPDPEA VAEDVKRRVN ASLSRRNLLS 60 IQEKDQCQTG NPIDDCWRCD PNWANNRQRL ADCAIGFGQG TLGGRGGQIY VVTDSSDHNP 120 ANPTPGTLRY AVIQDQPLWI IFSSDMVIKL KHELIFNSYK TIDGRGANVH ITGNGCITLQ 180 HVTHIIIHNI HVHHCKPSGN TNIASSPTHV GQRGESDGDG ISISGSQKIW IDHCSLSYCT 240 DGLIDAILGS TAITISNNHF THHNEVMLLG HNDKYVLDSG MQVTIAFNHF GVGLVQRMPR 300 CRRGYIHVVN NDFTAWEMYA IGGSANPTIN SQGNRYTAPA DYNAKEVTKR VDTNEGEWAD 360 WNWRTDEDIL VNGAFFVPSG AGLSEQYSKA SSVEPRSARL ITELTMNAGV FGDPRDDSGG 420 ISNPGFSGAG TSTVTPTTGT QGTGAGGGTD GDYFGMIFGS GSSLPRPPTS ISLIFLSLLI 480 ILALSTITNN GALLSFPLLS L* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3866 | PelB | 4.0e-18 | 227 | 334 | 119 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 2.0e-49 | 151 | 336 | 209 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 7.0e-59 | 145 | 339 | 211 | + Amb_all domain. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | NP_196051.2 | 0 | 2 | 479 | 13 | 508 | pectate lyase family protein [Arabidopsis thaliana] |
RefSeq | XP_002268818.1 | 0 | 3 | 468 | 2 | 465 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002311060.1 | 0 | 1 | 348 | 1 | 354 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002316399.1 | 0 | 1 | 415 | 1 | 415 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002534016.1 | 0 | 1 | 468 | 2 | 465 | Pectate lyase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 71 | 410 | 2 | 344 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 71 | 410 | 2 | 344 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 4e-18 | 90 | 336 | 2 | 246 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1vbl_A | 0.00000000000003 | 161 | 355 | 135 | 349 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
PDB | 1jta_A | 0.0000000000001 | 184 | 409 | 115 | 357 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |