Basic Information | |
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Species | Populus trichocarpa |
Cazyme ID | Potri.008G032700.2 |
Family | PL1 |
Protein Properties | Length: 422 Molecular Weight: 46621.3 Isoelectric Point: 6.5401 |
Chromosome | Chromosome/Scaffold: 08 Start: 1800700 End: 1805150 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 140 | 344 | 0 |
QDQPLWIIFSSDMVIKLKHELIFNSYKTIDGRGANVHITGNGCITLQHVTHIIIHNIHVHHCKPSGNTNIASSPTHVGQRGESDGDGISISGSQKIWIDH CSLSYCTDGLIDAILGSTAITISNNHFTHHNEVMLLGHNDKYVLDSGMQVTIAFNHFGVGLVQRMPRCRRGYIHVVNNDFTAWEMYAIGGSANPTINSQG NRYTA |
Full Sequence |
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Protein Sequence Length: 422 Download |
MKLSNFCVLL ICHFTSFIPF IIETTAFNLT LPHQHPDPEA VAEDVKRQDL YIHLVNASLS 60 RRNLLSIQEK DQCQTGNPID DCWRCDPNWA NNRQRLADCA IGFGQGTLGG RGGQIYVVTD 120 SSDHNPANPT PGTLRYAVIQ DQPLWIIFSS DMVIKLKHEL IFNSYKTIDG RGANVHITGN 180 GCITLQHVTH IIIHNIHVHH CKPSGNTNIA SSPTHVGQRG ESDGDGISIS GSQKIWIDHC 240 SLSYCTDGLI DAILGSTAIT ISNNHFTHHN EVMLLGHNDK YVLDSGMQVT IAFNHFGVGL 300 VQRMPRCRRG YIHVVNNDFT AWEMYAIGGS ANPTINSQGN RYTAPADYNA KEVTKRVDTN 360 EGEWADWNWR TDEDILVNGA FFVPSGAGLS EQYSKASSVE PRSARLITEL TMNAGVFGDP 420 R* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3866 | PelB | 2.0e-18 | 233 | 340 | 119 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 4.0e-50 | 157 | 342 | 209 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 3.0e-59 | 151 | 345 | 211 | + Amb_all domain. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | NP_196051.2 | 0 | 2 | 420 | 13 | 438 | pectate lyase family protein [Arabidopsis thaliana] |
RefSeq | XP_002268818.1 | 0 | 3 | 421 | 2 | 416 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002311060.1 | 0 | 1 | 354 | 1 | 354 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002316399.1 | 0 | 1 | 421 | 1 | 415 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002534016.1 | 0 | 1 | 421 | 2 | 416 | Pectate lyase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 77 | 416 | 2 | 344 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 77 | 416 | 2 | 344 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 6e-18 | 96 | 342 | 2 | 246 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1vbl_A | 0.00000000000003 | 167 | 361 | 135 | 349 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
PDB | 1jta_A | 0.00000000000007 | 102 | 415 | 22 | 357 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
CK243724 | 329 | 33 | 358 | 0 |
DY293469 | 331 | 3 | 333 | 0 |
DY286386 | 385 | 7 | 388 | 0 |
DY265324 | 287 | 55 | 341 | 0 |
HO778688 | 385 | 37 | 421 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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