Basic Information | |
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Species | Populus trichocarpa |
Cazyme ID | Potri.008G048600.1 |
Family | PL1 |
Protein Properties | Length: 328 Molecular Weight: 36347.2 Isoelectric Point: 7.8926 |
Chromosome | Chromosome/Scaffold: 08 Start: 2872409 End: 2874229 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 61 | 231 | 0 |
IVFEVSGTINLVSQLSVSSYKTIDGRGQRIKVAGKGLRLKECEHVIVCNLEFEGGRGHDIDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSR CYFAQHDKTMLIGADASHVGDRCIRVTIHHCFFNGTRQRHPRLRFGKVHLYNNYTRNWGIYAVCASVEAQV |
Full Sequence |
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Protein Sequence Length: 328 Download |
MATLPYADVD SSLRAMAGRA EGFGRFSIGG LHGPLYSVTT LADDGPGSLR EGCRRQEPLW 60 IVFEVSGTIN LVSQLSVSSY KTIDGRGQRI KVAGKGLRLK ECEHVIVCNL EFEGGRGHDI 120 DGIQIKPNSR HIWIDRCSLR DYDDGLIDIT RQSTDITVSR CYFAQHDKTM LIGADASHVG 180 DRCIRVTIHH CFFNGTRQRH PRLRFGKVHL YNNYTRNWGI YAVCASVEAQ VGKGERYIEA 240 GQKKKTFEFY TEKAADRQGA SSGLIRSEGD VLLNGAQSCL LQGVGENCVF HPGEYYPTWT 300 LESPLDSLKD VLQICTGWQS IPRPAGM* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam00544 | Pec_lyase_C | 5.0e-37 | 62 | 231 | 190 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
COG3866 | PelB | 3.0e-44 | 27 | 311 | 306 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
smart00656 | Amb_all | 1.0e-63 | 65 | 231 | 179 | + Amb_all domain. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABK92527.1 | 0 | 16 | 327 | 1 | 312 | unknown [Populus trichocarpa] |
RefSeq | NP_191074.2 | 0 | 1 | 325 | 1 | 325 | pectate lyase family protein [Arabidopsis thaliana] |
RefSeq | XP_002276049.1 | 0 | 1 | 327 | 1 | 327 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002311134.1 | 0 | 1 | 327 | 1 | 327 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002526780.1 | 0 | 1 | 312 | 1 | 312 | Pectate lyase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 3e-38 | 10 | 296 | 15 | 327 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 3e-38 | 10 | 296 | 15 | 327 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 2e-26 | 27 | 231 | 21 | 239 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1vbl_A | 2e-23 | 77 | 214 | 130 | 300 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
PDB | 3vmw_A | 2e-21 | 82 | 280 | 82 | 292 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
DY275282 | 325 | 1 | 325 | 0 |
DY277275 | 310 | 4 | 313 | 0 |
JG177860 | 304 | 21 | 324 | 0 |
CX546286 | 294 | 7 | 300 | 0 |
DY277275 | 22 | 306 | 327 | 0.033 |
Sequence Alignments (This image is cropped. Click for full image.) |
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