Basic Information | |
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Species | Populus trichocarpa |
Cazyme ID | Potri.008G082900.2 |
Family | CBM43 |
Protein Properties | Length: 372 Molecular Weight: 39182.9 Isoelectric Point: 5.9999 |
Chromosome | Chromosome/Scaffold: 08 Start: 5219886 End: 5221993 |
Description | Carbohydrate-binding X8 domain superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM43 | 285 | 367 | 1e-33 |
WCVAKPSVPDPIIQEAMNYACGSGADCDSIQPSGSCFEPNTLFAHASYAFNSYWQRTKVAGGTCSFGGTAMLVTVDPSYDGCQ |
Full Sequence |
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Protein Sequence Length: 372 Download |
MEISKGCKRV CILLLYLTIA ATPFTLCNAR RSVRLFKGPV HARSSVNRHA KKLKVTEHFD 60 LASLLLQKET MDSSNAGPYV SSPFTLPPYD SLGPISLPDN APPFCIYPPN TPQPPSTTIP 120 TPAGYVPSSS PPPFSYLPPA LPILNPPPSP TGVVPSPPEF TPIPNPPEIV PSPPGVTPST 180 PEVVPGPPVN IPGTPEVAVP SPPGTIPGTP ESVPSPTIYV PSPPEAEPGP PYYEPSPPSY 240 IPSPPIFVPS PTGFVPSPRI FHPPVVYPPP TGPPSPRTSP YTALWCVAKP SVPDPIIQEA 300 MNYACGSGAD CDSIQPSGSC FEPNTLFAHA SYAFNSYWQR TKVAGGTCSF GGTAMLVTVD 360 PSYDGCQFMY A* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam07983 | X8 | 3.0e-25 | 284 | 355 | 77 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
smart00768 | X8 | 7.0e-42 | 284 | 368 | 85 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | NP_001117621.1 | 0 | 1 | 370 | 1 | 395 | unknown protein [Arabidopsis thaliana] |
RefSeq | NP_178066.2 | 0 | 1 | 370 | 1 | 396 | unknown protein [Arabidopsis thaliana] |
RefSeq | XP_002264966.1 | 0 | 1 | 370 | 1 | 367 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002312230.1 | 0 | 71 | 362 | 1 | 292 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002516415.1 | 0 | 71 | 370 | 1 | 262 | conserved hypothetical protein [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2jon_A | 7e-21 | 285 | 368 | 13 | 96 | A Chain A, Solution Structure Of The C-Terminal Domain Ole E 9 |