| Basic Information | |
|---|---|
| Species | Populus trichocarpa |
| Cazyme ID | Potri.008G100500.1 |
| Family | GH28 |
| Protein Properties | Length: 483 Molecular Weight: 52023.4 Isoelectric Point: 4.5908 |
| Chromosome | Chromosome/Scaffold: 08 Start: 6291215 End: 6294186 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 115 | 440 | 0 |
| CGVESGVILAPSGHSFMITSTIFTGPCKPGLVFQVDGYLMPPDGPDCWPEKDSTKQWLVFYRLDGMTLTGKGTIEGNGEKWWDLPCKPHRSPNGSTSKGP CDSPALIRFFMSSNLAVSGLRIQNSPQFHMKFDGCEGVLIEKLSISSPKLSPNTDGIHIENTKAVGIYDSSISNGDDCISIGTGCSNVDIDGLTCGPSHG ISIGSLGVHHSQACVRNITVRNSVIKESDNGLRIKTWQGGTGCVSDINFENIQMENVRNCMNIDQYYCLSKACLNETSAVYVTGVTYRNIKGTYDVRTPP IHFACSDTVACTDIILSEVELLPEEG | |||
| Full Sequence |
|---|
| Protein Sequence Length: 483 Download |
| MEIIRGFFAI CIGVSLLLYN SSNVEGRYHY HKPKNKSSNN IGSPVSPPPD DTPDPQNPIA 60 PSSPSNPPSI PSDPYPKDPG NTSSGCIFNV MDYGAVGDGS TDDTDAFRQA WKEACGVESG 120 VILAPSGHSF MITSTIFTGP CKPGLVFQVD GYLMPPDGPD CWPEKDSTKQ WLVFYRLDGM 180 TLTGKGTIEG NGEKWWDLPC KPHRSPNGST SKGPCDSPAL IRFFMSSNLA VSGLRIQNSP 240 QFHMKFDGCE GVLIEKLSIS SPKLSPNTDG IHIENTKAVG IYDSSISNGD DCISIGTGCS 300 NVDIDGLTCG PSHGISIGSL GVHHSQACVR NITVRNSVIK ESDNGLRIKT WQGGTGCVSD 360 INFENIQMEN VRNCMNIDQY YCLSKACLNE TSAVYVTGVT YRNIKGTYDV RTPPIHFACS 420 DTVACTDIIL SEVELLPEEG ELMDDPFCWN AYGTQETVTI PPINCLREGQ PESQGEVSSV 480 GC* |
| Functional Domains Download unfiltered results here | ||||||
|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description |
| PLN02188 | PLN02188 | 6.0e-74 | 83 | 462 | 384 | + polygalacturonase/glycoside hydrolase family protein |
| PLN03010 | PLN03010 | 8.0e-76 | 85 | 441 | 362 | + polygalacturonase |
| pfam00295 | Glyco_hydro_28 | 4.0e-82 | 121 | 435 | 315 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. |
| PLN02218 | PLN02218 | 5.0e-90 | 89 | 435 | 351 | + polygalacturonase ADPG |
| PLN02793 | PLN02793 | 3.0e-108 | 87 | 462 | 379 | + Probable polygalacturonase |
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAK95305.1 | 0 | 1 | 471 | 1 | 463 | AF410319_1 At1g48100/F21D18_17 [Arabidopsis thaliana] |
| RefSeq | NP_175244.1 | 0 | 1 | 471 | 1 | 463 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | XP_002263668.1 | 0 | 1 | 482 | 1 | 477 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002312305.1 | 0 | 1 | 482 | 1 | 482 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002519290.1 | 0 | 1 | 482 | 1 | 479 | Polygalacturonase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1rmg_A | 1e-24 | 89 | 454 | 22 | 356 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
| PDB | 1nhc_F | 1e-22 | 180 | 435 | 72 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 1e-22 | 180 | 435 | 72 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_D | 1e-22 | 180 | 435 | 72 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_C | 1e-22 | 180 | 435 | 72 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
