Basic Information | |
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Species | Populus trichocarpa |
Cazyme ID | Potri.008G100500.2 |
Family | GH28 |
Protein Properties | Length: 293 Molecular Weight: 31436.3 Isoelectric Point: 5.3044 |
Chromosome | Chromosome/Scaffold: 08 Start: 6291327 End: 6294161 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 115 | 289 | 5.19999e-40 |
CGVESGVILAPSGHSFMITSTIFTGPCKPGLVFQVDGYLMPPDGPDCWPEKDSTKQWLVFYRLDGMTLTGKGTIEGNGEKWWDLPCKPHRSPNGSTSKGP CDSPALIRFFMSSNLAVSGLRIQNSPQFHMKFDGCEGVLIEKLSISSPKLSPNTDGIHIENTKAVGIYDSSISNG |
Full Sequence |
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Protein Sequence Length: 293 Download |
MEIIRGFFAI CIGVSLLLYN SSNVEGRYHY HKPKNKSSNN IGSPVSPPPD DTPDPQNPIA 60 PSSPSNPPSI PSDPYPKDPG NTSSGCIFNV MDYGAVGDGS TDDTDAFRQA WKEACGVESG 120 VILAPSGHSF MITSTIFTGP CKPGLVFQVD GYLMPPDGPD CWPEKDSTKQ WLVFYRLDGM 180 TLTGKGTIEG NGEKWWDLPC KPHRSPNGST SKGPCDSPAL IRFFMSSNLA VSGLRIQNSP 240 QFHMKFDGCE GVLIEKLSIS SPKLSPNTDG IHIENTKAVG IYDSSISNGT TN* 300 |
Functional Domains Download unfiltered results here | ||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description |
PLN03003 | PLN03003 | 3.0e-31 | 88 | 289 | 204 | + Probable polygalacturonase At3g15720 |
PLN02188 | PLN02188 | 1.0e-31 | 83 | 289 | 208 | + polygalacturonase/glycoside hydrolase family protein |
PLN03010 | PLN03010 | 2.0e-34 | 85 | 289 | 208 | + polygalacturonase |
PLN02218 | PLN02218 | 2.0e-38 | 89 | 289 | 205 | + polygalacturonase ADPG |
PLN02793 | PLN02793 | 1.0e-43 | 87 | 289 | 205 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABC87913.1 | 0 | 1 | 289 | 1 | 296 | polygalacturonase precursor [Glycine max] |
GenBank | ABC87915.1 | 0 | 1 | 289 | 1 | 296 | polygalacturonase precursor [Glycine max] |
RefSeq | XP_002263668.1 | 0 | 1 | 289 | 1 | 284 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002312305.1 | 0 | 1 | 289 | 1 | 289 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002519290.1 | 0 | 1 | 289 | 1 | 287 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 0.0000000006 | 89 | 289 | 29 | 259 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 0.0000000006 | 89 | 289 | 29 | 259 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 0.0000000006 | 89 | 289 | 29 | 259 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 0.0000000006 | 89 | 289 | 29 | 259 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 1bhe_A | 0.0000004 | 184 | 292 | 115 | 225 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |