Basic Information | |
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Species | Populus trichocarpa |
Cazyme ID | Potri.008G104800.1 |
Family | CE8 |
Protein Properties | Length: 344 Molecular Weight: 38137.2 Isoelectric Point: 9.1424 |
Chromosome | Chromosome/Scaffold: 08 Start: 6644973 End: 6646418 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 50 | 334 | 0 |
KVDINGDGDFTSVQEAINAVPKNNSQWIIIHLRKGVYREKVHVPKNKPYIFMRGNGKGRTVIVWSQSSANNKASATFTVEAPNFVAFGISFKNEAPTGMA FTSQNQSVAAFVGSDMAAFYHCGFYSTHNTLFDYKGRHYYDNCYIQGSIDFIFGRGRSIFHSCEVFVIADMRVDILGSITAHNRETEDDSGFVFIKGKFY GIGNVYLGRAKGAYSRVVFAKAYLSKTIAPKGWTNWSYAGKTENLYQAEYKCHGPGADPENRAPWSKQLTEEEAKSFMSIDFIDG |
Full Sequence |
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Protein Sequence Length: 344 Download |
MSLKPAHVAS FATILVLALS LSGHVDGLTA QTVIDSPLLT HKIGTNRTIK VDINGDGDFT 60 SVQEAINAVP KNNSQWIIIH LRKGVYREKV HVPKNKPYIF MRGNGKGRTV IVWSQSSANN 120 KASATFTVEA PNFVAFGISF KNEAPTGMAF TSQNQSVAAF VGSDMAAFYH CGFYSTHNTL 180 FDYKGRHYYD NCYIQGSIDF IFGRGRSIFH SCEVFVIADM RVDILGSITA HNRETEDDSG 240 FVFIKGKFYG IGNVYLGRAK GAYSRVVFAK AYLSKTIAPK GWTNWSYAGK TENLYQAEYK 300 CHGPGADPEN RAPWSKQLTE EEAKSFMSID FIDGKEWLPV WQN* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02665 | PLN02665 | 2.0e-88 | 47 | 338 | 296 | + pectinesterase family protein | ||
PLN02497 | PLN02497 | 1.0e-89 | 47 | 338 | 296 | + probable pectinesterase | ||
PLN02432 | PLN02432 | 1.0e-92 | 49 | 338 | 291 | + putative pectinesterase | ||
PLN02682 | PLN02682 | 1.0e-100 | 47 | 339 | 304 | + pectinesterase family protein | ||
PLN02480 | PLN02480 | 0 | 1 | 342 | 342 | + Probable pectinesterase |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACU23222.1 | 0 | 7 | 341 | 11 | 345 | unknown [Glycine max] |
RefSeq | NP_188331.1 | 0 | 14 | 341 | 8 | 339 | pectinesterase family protein [Arabidopsis thaliana] |
RefSeq | XP_002272939.1 | 0 | 32 | 341 | 37 | 347 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002311381.1 | 0 | 1 | 343 | 1 | 343 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002523016.1 | 0 | 20 | 341 | 28 | 349 | Pectinesterase-2 precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 2.00386e-43 | 40 | 338 | 2 | 308 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 4e-32 | 54 | 338 | 10 | 304 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 3uw0_A | 8e-19 | 46 | 248 | 32 | 252 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
PDB | 2ntq_B | 0.0000000000004 | 59 | 340 | 18 | 340 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
PDB | 2ntq_A | 0.0000000000004 | 59 | 340 | 18 | 340 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |