| Basic Information | |
|---|---|
| Species | Populus trichocarpa |
| Cazyme ID | Potri.008G117000.1 |
| Family | CBM57 |
| Protein Properties | Length: 623 Molecular Weight: 68489.5 Isoelectric Point: 4.9549 |
| Chromosome | Chromosome/Scaffold: 08 Start: 7508326 End: 7518174 |
| Description | Di-glucose binding protein with Leucine-rich repeat domain |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| CBM57 | 210 | 355 | 1.7e-23 |
| NDTDDFGRTWQSDSEFQTPNTTKIIHSISTRETITGTIQPPNYFPMKLYQTAVTGDGTLEYAVSVDAKMDYLLWFHFAEIDSSVKQKSERVFDVVVNEKN VERVDVFEEVGSFAAYSWSYTVHNLSSTVLTLKFVPVVGAPIISGI | |||
| Full Sequence |
|---|
| Protein Sequence Length: 623 Download |
| MSVLFFLFSL PLLLSPSLSL HFGNTSYFID CGGSTNTTDP FNTTWLSDRY FTGGATSVVS 60 EPLHFLYPQE KNLRFFPLSS GKKNCYVLPL PNGRYYFRTF TVYDNYDGKS NPPSFDASVE 120 GTLVFSWRSP WPENLARDGA YSDLFAFVKD GEADVCFYSI ATDPPVIGSL EIRQIDPLSY 180 GSSTIGDKFT LVNYGRLSCG STQWGPGFSN DTDDFGRTWQ SDSEFQTPNT TKIIHSISTR 240 ETITGTIQPP NYFPMKLYQT AVTGDGTLEY AVSVDAKMDY LLWFHFAEID SSVKQKSERV 300 FDVVVNEKNV ERVDVFEEVG SFAAYSWSYT VHNLSSTVLT LKFVPVVGAP IISGIEIYAL 360 VPNDLSTMPE QVVAMRALKE SLRVPDRMGW NGDPCAPTSW DAWEGVTCHP NKDETALVIS 420 QIDLGSQGLK GSISEQITLL SDLLSLNLST NSLGGTLPSG LGQQSLVRLD LSNNQFSGPI 480 PESLASAIHL QLVLLNGNLL EGRVPEELYS IGVHGGAIDL SGNKGLCGVP SLPQCSLLWE 540 NGRLSTGGKI GIGLSCLVIV SVLVLGYIIC IRRRRNDYDF APPHDLMSMA AKRNRYQRQK 600 SLMLLEMESQ HAKGLPSPYG PH* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam12819 | Malectin_like | 0.0002 | 197 | 386 | 205 | + Carbohydrate-binding protein of the ER. Malectin is a membrane-anchored protein of the endoplasmic reticulum that recognises and binds Glc2-N-glycan. The domain is found on a number of plant receptor kinases. | ||
| pfam11721 | Malectin | 0.0002 | 25 | 158 | 153 | + Di-glucose binding within endoplasmic reticulum. Malectin is a membrane-anchored protein of the endoplasmic reticulum that recognises and binds Glc2-N-glycan. It carries a signal peptide from residues 1-26, a C-terminal transmembrane helix from residues 255-274, and a highly conserved central part of approximately 190 residues followed by an acidic, glutamate-rich region. Carbohydrate-binding is mediated by the four aromatic residues, Y67, Y89, Y116, and F117 and the aspartate at D186. NMR-based ligand-screening studies has shown binding of the protein to maltose and related oligosaccharides, on the basis of which the protein has been designated "malectin", and its endogenous ligand is found to be Glc2-high-mannose N-glycan. | ||
| pfam11721 | Malectin | 1.0e-14 | 196 | 355 | 174 | + Di-glucose binding within endoplasmic reticulum. Malectin is a membrane-anchored protein of the endoplasmic reticulum that recognises and binds Glc2-N-glycan. It carries a signal peptide from residues 1-26, a C-terminal transmembrane helix from residues 255-274, and a highly conserved central part of approximately 190 residues followed by an acidic, glutamate-rich region. Carbohydrate-binding is mediated by the four aromatic residues, Y67, Y89, Y116, and F117 and the aspartate at D186. NMR-based ligand-screening studies has shown binding of the protein to maltose and related oligosaccharides, on the basis of which the protein has been designated "malectin", and its endogenous ligand is found to be Glc2-high-mannose N-glycan. | ||
| pfam12819 | Malectin_like | 3.0e-63 | 29 | 358 | 352 | + Carbohydrate-binding protein of the ER. Malectin is a membrane-anchored protein of the endoplasmic reticulum that recognises and binds Glc2-N-glycan. The domain is found on a number of plant receptor kinases. | ||
| PLN03150 | PLN03150 | 2.0e-105 | 29 | 576 | 562 | + hypothetical protein; Provisional | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAG50525.1 | 0 | 17 | 595 | 21 | 550 | AC084221_7 hypothetical protein [Arabidopsis thaliana] |
| RefSeq | NP_564237.2 | 0 | 17 | 617 | 21 | 622 | leucine-rich repeat protein-related [Arabidopsis thaliana] |
| RefSeq | XP_002281668.1 | 0 | 24 | 617 | 28 | 621 | PREDICTED: similar to leucine-rich repeat protein-related [Vitis vinifera] |
| RefSeq | XP_002457393.1 | 0 | 23 | 622 | 26 | 632 | hypothetical protein SORBIDRAFT_03g006620 [Sorghum bicolor] |
| RefSeq | XP_002524408.1 | 0 | 24 | 593 | 21 | 591 | serine-threonine protein kinase, plant-type, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 4hq1_A | 0.00000002 | 374 | 508 | 31 | 156 | A Chain A, Structure Of The Gh47 Processing Alpha-1,2-mannosidase From Caulobacter Strain K31 |
| PDB | 4hq1_A | 0.0004 | 424 | 513 | 216 | 304 | A Chain A, Structure Of The Gh47 Processing Alpha-1,2-mannosidase From Caulobacter Strain K31 |
| PDB | 3rgz_A | 0.00003 | 418 | 508 | 395 | 486 | A Chain A, Structure Of The Gh47 Processing Alpha-1,2-mannosidase From Caulobacter Strain K31 |
| PDB | 3rgz_A | 0.0002 | 422 | 482 | 661 | 722 | A Chain A, Structure Of The Gh47 Processing Alpha-1,2-mannosidase From Caulobacter Strain K31 |
