| Basic Information | |
|---|---|
| Species | Populus trichocarpa |
| Cazyme ID | Potri.008G174100.1 |
| Family | GH14 |
| Protein Properties | Length: 583 Molecular Weight: 65228.9 Isoelectric Point: 6.4103 |
| Chromosome | Chromosome/Scaffold: 08 Start: 11882935 End: 11885754 |
| Description | beta-amylase 1 |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH14 | 118 | 538 | 0 |
| YVMMPLDSVTMSNTLNRRKAMNASLQALKSAGVEGVMMDVWWGLVERDTPGVYNWGGYTELLEMAKRHGLKVQAVMSFHQCGGNVGDSCTVPLPKWVVEE VHKDQDLAYTDQWGRRNYEYVSLGCDSIPVLKGRTPVQCYSDFMRAFRDNFKHLLGDTIVEIQVGMGPAGELRYPSYPEQNGTWRFPGIGAFQCYDKYML SSLKAAAEAAGKPEWGSTGPTDAGEYNNWPEDTRFFRKEGGGWTCPYGEFFLSWYSQMLLDHAERILSSAKAIYENTGVKISVKIAGIHWHYGTRSHAPE LTAGYYNTRNRDGYLPIAQMLARYGAIFNFTCIEMRDHEQPQDALCAPEKLVRQVALATREAEVPLAGENALPRYDENAHEQILQASSLNIDGNSKDSEM CAFTYLRMNPHLFQPDNWRRF | |||
| Full Sequence |
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| Protein Sequence Length: 583 Download |
| MNITHQIGAL AGTPIQAESI TNTETTATAS AAAVWKTPIP NIRCKITKPD TAEQKSQPTS 60 PCRSPILSAG NGIRPDLSVA CRAFATETMD LVSFDETTEQ EKTYKEVNTV KEKGVPVYVM 120 MPLDSVTMSN TLNRRKAMNA SLQALKSAGV EGVMMDVWWG LVERDTPGVY NWGGYTELLE 180 MAKRHGLKVQ AVMSFHQCGG NVGDSCTVPL PKWVVEEVHK DQDLAYTDQW GRRNYEYVSL 240 GCDSIPVLKG RTPVQCYSDF MRAFRDNFKH LLGDTIVEIQ VGMGPAGELR YPSYPEQNGT 300 WRFPGIGAFQ CYDKYMLSSL KAAAEAAGKP EWGSTGPTDA GEYNNWPEDT RFFRKEGGGW 360 TCPYGEFFLS WYSQMLLDHA ERILSSAKAI YENTGVKISV KIAGIHWHYG TRSHAPELTA 420 GYYNTRNRDG YLPIAQMLAR YGAIFNFTCI EMRDHEQPQD ALCAPEKLVR QVALATREAE 480 VPLAGENALP RYDENAHEQI LQASSLNIDG NSKDSEMCAF TYLRMNPHLF QPDNWRRFVG 540 FVKKMNEVKS PDRCLEQVER EAEHFVHVSR PLVKEAAVAH MH* 600 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02161 | PLN02161 | 6.0e-141 | 109 | 546 | 448 | + beta-amylase | ||
| PLN02905 | PLN02905 | 1.0e-142 | 88 | 546 | 463 | + beta-amylase | ||
| PLN02801 | PLN02801 | 2.0e-180 | 115 | 545 | 435 | + beta-amylase | ||
| PLN00197 | PLN00197 | 0 | 1 | 582 | 582 | + beta-amylase; Provisional | ||
| PLN02803 | PLN02803 | 0 | 46 | 547 | 507 | + beta-amylase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0000272 | polysaccharide catabolic process |
| GO:0016161 | beta-amylase activity |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CAN71375.1 | 0 | 1 | 582 | 1 | 570 | hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002285569.1 | 0 | 1 | 582 | 4 | 573 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002311706.1 | 0 | 1 | 582 | 1 | 562 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002314522.1 | 0 | 109 | 579 | 1 | 471 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002518196.1 | 0 | 1 | 582 | 3 | 574 | Beta-amylase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1wdp_A | 0 | 115 | 546 | 12 | 442 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
| PDB | 1q6c_A | 0 | 115 | 546 | 12 | 442 | A Chain A, Crystal Structure Of Soybean Beta-Amylase Complexed With Maltose |
| PDB | 1bfn_A | 0 | 115 | 546 | 12 | 442 | A Chain A, Crystal Structure Of Soybean Beta-Amylase Complexed With Maltose |
| PDB | 1wdr_A | 0 | 115 | 546 | 12 | 442 | A Chain A, The Role Of An Inner Loop In The Catalytic Mechanism Of Soybean Beta-Amylase |
| PDB | 1v3i_A | 0 | 115 | 546 | 12 | 442 | A Chain A, The Roles Of Glu186 And Glu380 In The Catalytic Reaction Of Soybean Beta-Amylase |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| starch degradation I | RXN-1827 | EC-3.2.1.2 | β-amylase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| HO779314 | 411 | 173 | 583 | 0 |
| HO826564 | 406 | 171 | 576 | 0 |
| HO798206 | 349 | 235 | 583 | 0 |
| DT555349 | 320 | 202 | 521 | 0 |
| DY279190 | 349 | 234 | 582 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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