| Basic Information | |
|---|---|
| Species | Populus trichocarpa |
| Cazyme ID | Potri.008G174100.2 |
| Family | GH14 |
| Protein Properties | Length: 563 Molecular Weight: 62936.1 Isoelectric Point: 6.2057 |
| Chromosome | Chromosome/Scaffold: 08 Start: 11882942 End: 11885754 |
| Description | beta-amylase 1 |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH14 | 98 | 518 | 0 |
| YVMMPLDSVTMSNTLNRRKAMNASLQALKSAGVEGVMMDVWWGLVERDTPGVYNWGGYTELLEMAKRHGLKVQAVMSFHQCGGNVGDSCTVPLPKWVVEE VHKDQDLAYTDQWGRRNYEYVSLGCDSIPVLKGRTPVQCYSDFMRAFRDNFKHLLGDTIVEIQVGMGPAGELRYPSYPEQNGTWRFPGIGAFQCYDKYML SSLKAAAEAAGKPEWGSTGPTDAGEYNNWPEDTRFFRKEGGGWTCPYGEFFLSWYSQMLLDHAERILSSAKAIYENTGVKISVKIAGIHWHYGTRSHAPE LTAGYYNTRNRDGYLPIAQMLARYGAIFNFTCIEMRDHEQPQDALCAPEKLVRQVALATREAEVPLAGENALPRYDENAHEQILQASSLNIDGNSKDSEM CAFTYLRMNPHLFQPDNWRRF | |||
| Full Sequence |
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| Protein Sequence Length: 563 Download |
| MNITHQIGAL AGTPIQAESI TNTETTATAS AAAQKSQPTS PCRSPILSAG NGIRPDLSVA 60 CRAFATETMD LVSFDETTEQ EKTYKEVNTV KEKGVPVYVM MPLDSVTMSN TLNRRKAMNA 120 SLQALKSAGV EGVMMDVWWG LVERDTPGVY NWGGYTELLE MAKRHGLKVQ AVMSFHQCGG 180 NVGDSCTVPL PKWVVEEVHK DQDLAYTDQW GRRNYEYVSL GCDSIPVLKG RTPVQCYSDF 240 MRAFRDNFKH LLGDTIVEIQ VGMGPAGELR YPSYPEQNGT WRFPGIGAFQ CYDKYMLSSL 300 KAAAEAAGKP EWGSTGPTDA GEYNNWPEDT RFFRKEGGGW TCPYGEFFLS WYSQMLLDHA 360 ERILSSAKAI YENTGVKISV KIAGIHWHYG TRSHAPELTA GYYNTRNRDG YLPIAQMLAR 420 YGAIFNFTCI EMRDHEQPQD ALCAPEKLVR QVALATREAE VPLAGENALP RYDENAHEQI 480 LQASSLNIDG NSKDSEMCAF TYLRMNPHLF QPDNWRRFVG FVKKMNEVKS PDRCLEQVER 540 EAEHFVHVSR PLVKEAAVAH MH* 600 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02161 | PLN02161 | 4.0e-141 | 89 | 526 | 448 | + beta-amylase | ||
| PLN02905 | PLN02905 | 1.0e-142 | 68 | 526 | 463 | + beta-amylase | ||
| PLN02801 | PLN02801 | 2.0e-180 | 95 | 525 | 435 | + beta-amylase | ||
| PLN00197 | PLN00197 | 0 | 1 | 562 | 575 | + beta-amylase; Provisional | ||
| PLN02803 | PLN02803 | 0 | 93 | 527 | 435 | + beta-amylase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0000272 | polysaccharide catabolic process |
| GO:0016161 | beta-amylase activity |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CAN71375.1 | 0 | 1 | 562 | 1 | 570 | hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002285569.1 | 0 | 1 | 562 | 4 | 573 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002311706.1 | 0 | 1 | 562 | 1 | 562 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002314522.1 | 0 | 89 | 559 | 1 | 471 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002518196.1 | 0 | 1 | 562 | 3 | 574 | Beta-amylase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1wdp_A | 0 | 95 | 526 | 12 | 442 | A Chain A, The Roles Of Glu186 And Glu380 In The Catalytic Reaction Of Soybean Beta-Amylase |
| PDB | 1q6c_A | 0 | 95 | 526 | 12 | 442 | A Chain A, Crystal Structure Of Soybean Beta-Amylase Complexed With Maltose |
| PDB | 1bfn_A | 0 | 95 | 526 | 12 | 442 | A Chain A, Crystal Structure Of Soybean Beta-Amylase Complexed With Maltose |
| PDB | 1v3i_A | 0 | 95 | 526 | 12 | 442 | A Chain A, The Roles Of Glu186 And Glu380 In The Catalytic Reaction Of Soybean Beta-Amylase |
| PDB | 1v3h_A | 0 | 95 | 526 | 12 | 442 | A Chain A, The Roles Of Glu186 And Glu380 In The Catalytic Reaction Of Soybean Beta-Amylase |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| starch degradation I | RXN-1827 | EC-3.2.1.2 | β-amylase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| HO779314 | 411 | 153 | 563 | 0 |
| HO826564 | 406 | 151 | 556 | 0 |
| HO798206 | 349 | 215 | 563 | 0 |
| DT555349 | 320 | 182 | 501 | 0 |
| DY279190 | 349 | 214 | 562 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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