Basic Information | |
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Species | Populus trichocarpa |
Cazyme ID | Potri.008G182200.1 |
Family | PL1 |
Protein Properties | Length: 403 Molecular Weight: 43970.8 Isoelectric Point: 8.0422 |
Chromosome | Chromosome/Scaffold: 08 Start: 12412731 End: 12414811 |
Description | Pectate lyase family protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 122 | 321 | 0 |
WIIFARDMVIKLKEELIMNSFKTIDGRGASVHIAGGPCITVQYVTNIIIHGINIHDCKQGGNAYVRDSPGHYGWRTISDGDGVSIFGGSHVWVDHCSLSN CNDGLIDAIHGSTAITISNNYLTHHNKVMLLGHSDSYKQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYSHWKMYAIGGSADPTINSQGNRFLA |
Full Sequence |
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Protein Sequence Length: 403 Download |
MAIPLSLSIL LLILAPNFIS CSPVQDPELV VEEVHRSINA SRRKLGFLSC GTGNPIDDCW 60 RCDPKWEKNR QRLADCAIGF GKRAIGGRDG KIYVVTDPGN DDPVNPKPGT LRYAVIQEEP 120 LWIIFARDMV IKLKEELIMN SFKTIDGRGA SVHIAGGPCI TVQYVTNIII HGINIHDCKQ 180 GGNAYVRDSP GHYGWRTISD GDGVSIFGGS HVWVDHCSLS NCNDGLIDAI HGSTAITISN 240 NYLTHHNKVM LLGHSDSYKQ DKNMQVTIAF NHFGEGLVQR MPRCRHGYFH VVNNDYSHWK 300 MYAIGGSADP TINSQGNRFL APNDRFNKEV TKHEDAPQSE WKGWNWRSEG DLLLNGAFFT 360 ASGAGASSSY AKASSLGARP SSLVSSITAG AGSLACKKGS RC* |
Functional Domains Download unfiltered results here | ||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description |
COG3866 | PelB | 3.0e-27 | 141 | 319 | 191 | + Pectate lyase [Carbohydrate transport and metabolism] |
pfam00544 | Pec_lyase_C | 3.0e-72 | 134 | 319 | 209 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. |
smart00656 | Amb_all | 4.0e-80 | 128 | 323 | 207 | + Amb_all domain. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABK94358.1 | 0 | 1 | 402 | 1 | 402 | unknown [Populus trichocarpa] |
DDBJ | BAB59066.1 | 0 | 20 | 402 | 27 | 409 | pectate lyase [Salix gilgiana] |
RefSeq | XP_002285340.1 | 0 | 20 | 402 | 21 | 403 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002311747.1 | 0 | 1 | 402 | 1 | 402 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002515037.1 | 0 | 1 | 402 | 1 | 404 | Pectate lyase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 54 | 392 | 2 | 343 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 54 | 392 | 2 | 343 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 3e-18 | 123 | 320 | 50 | 247 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1pe9_B | 0.000000000000002 | 183 | 393 | 120 | 358 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1pe9_A | 0.000000000000002 | 183 | 393 | 120 | 358 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |