Basic Information | |
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Species | Populus trichocarpa |
Cazyme ID | Potri.008G189200.1 |
Family | GH28 |
Protein Properties | Length: 518 Molecular Weight: 56300.4 Isoelectric Point: 8.6522 |
Chromosome | Chromosome/Scaffold: 08 Start: 13104941 End: 13109286 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 126 | 470 | 0 |
AAACKVEASTLIVPAEYVFLVGPISFSGPYCQANIVFQLDGTIIAPSNANAWGRGLLQWLEFTKLVGITIQGKGTIDGSGSVWWQDYPFEDPIDSESELI IPLNNTVQQHPPMPIRNELNGKMPSIKPTALRFYGSFNVTVTGITIQNSPQCHLKFDNCVGVVVHDMRVSSPGNSPNTDGIHLQNSKDVLIRSTDLACGD DCVSIQTGCTNVYIHNVNCGPGHGISIGGLGKDNTKACVSNITVRDVVMHGTMTGVRVKTWQGGSGSVQGVLFSNIQVSEVQLPIVIDQFYCDKRKCKNQ TSAVALSGITYENIRGTYTVKPVHFACSDALPCMDVSLTTIELKP |
Full Sequence |
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Protein Sequence Length: 518 Download |
MVNMRGFSFR SLAFMLFIVF LVWSASFDTC IARRGKHWRQ SRSNPASLAK KKGKSHGNSH 60 HQHHSGVSKP KAPPHKAPAL PPPAPKEKAP KPSPPQKGST TFNVLDFGAK GNGKSDDTKA 120 FQAAWAAACK VEASTLIVPA EYVFLVGPIS FSGPYCQANI VFQLDGTIIA PSNANAWGRG 180 LLQWLEFTKL VGITIQGKGT IDGSGSVWWQ DYPFEDPIDS ESELIIPLNN TVQQHPPMPI 240 RNELNGKMPS IKPTALRFYG SFNVTVTGIT IQNSPQCHLK FDNCVGVVVH DMRVSSPGNS 300 PNTDGIHLQN SKDVLIRSTD LACGDDCVSI QTGCTNVYIH NVNCGPGHGI SIGGLGKDNT 360 KACVSNITVR DVVMHGTMTG VRVKTWQGGS GSVQGVLFSN IQVSEVQLPI VIDQFYCDKR 420 KCKNQTSAVA LSGITYENIR GTYTVKPVHF ACSDALPCMD VSLTTIELKP LQEQYHLYDP 480 FCWQTFGELK TPTMPPISCL QIGKPSGNRP QRDYDAC* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02188 | PLN02188 | 2.0e-62 | 98 | 469 | 378 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN03010 | PLN03010 | 9.0e-64 | 102 | 468 | 372 | + polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 8.0e-70 | 133 | 468 | 337 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 7.0e-72 | 100 | 469 | 375 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 2.0e-85 | 102 | 496 | 399 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABK95830.1 | 0 | 1 | 517 | 1 | 516 | unknown [Populus trichocarpa] |
RefSeq | XP_002266600.1 | 0 | 4 | 517 | 1 | 505 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002311773.1 | 0 | 1 | 517 | 1 | 517 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002314612.1 | 0 | 136 | 517 | 1 | 382 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002525361.1 | 0 | 4 | 517 | 1 | 519 | polygalacturonase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 6e-24 | 118 | 420 | 26 | 318 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 3jur_D | 2e-22 | 95 | 416 | 21 | 362 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 2e-22 | 95 | 416 | 21 | 362 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 2e-22 | 95 | 416 | 21 | 362 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 2e-22 | 95 | 416 | 21 | 362 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |