| Basic Information | |
|---|---|
| Species | Populus trichocarpa |
| Cazyme ID | Potri.008G204200.2 |
| Family | GH14 |
| Protein Properties | Length: 401 Molecular Weight: 44475.7 Isoelectric Point: 5.8731 |
| Chromosome | Chromosome/Scaffold: 08 Start: 14728945 End: 14731455 |
| Description | beta-amylase 3 |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH14 | 2 | 360 | 0 |
| GKYDWSGYLVLAEMIQNAGLKLHVSLCFHGSKQPKIPLPEWVSQIGDSEPSIYHADRSGNHYRECLSLAVDEVPVLNGKTPVQVYQEFCESFKSSFSHFF GSTITGVTVGLGPDGELRYPSHRQLASHSNILGVGEFQCYDKNMLNLLKVKAEATGNPLWGLGGPHDAPSYDQFPNSNHFFKDNGGSWDSPYGDFFLSWY SSELLSHGDRLLSLASTSFGDTSVTVHGKIPLMHSWYKTRSHPSELTAGFYNTVSRDGYEAVAEMFARNSCKMILPGMDLSDKHQPQESLSSPESILAQI RTVCRKHGVEISGQNSVVSKAPHGFEQIKKNISGESAVDLFTYQRMGADFFSPEHFPSF | |||
| Full Sequence |
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| Protein Sequence Length: 401 Download |
| MGKYDWSGYL VLAEMIQNAG LKLHVSLCFH GSKQPKIPLP EWVSQIGDSE PSIYHADRSG 60 NHYRECLSLA VDEVPVLNGK TPVQVYQEFC ESFKSSFSHF FGSTITGVTV GLGPDGELRY 120 PSHRQLASHS NILGVGEFQC YDKNMLNLLK VKAEATGNPL WGLGGPHDAP SYDQFPNSNH 180 FFKDNGGSWD SPYGDFFLSW YSSELLSHGD RLLSLASTSF GDTSVTVHGK IPLMHSWYKT 240 RSHPSELTAG FYNTVSRDGY EAVAEMFARN SCKMILPGMD LSDKHQPQES LSSPESILAQ 300 IRTVCRKHGV EISGQNSVVS KAPHGFEQIK KNISGESAVD LFTYQRMGAD FFSPEHFPSF 360 THFIRNLNQL GMFSDDLPEE EEVVESVLLN SESNTHMQAA * 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02905 | PLN02905 | 4.0e-73 | 3 | 368 | 380 | + beta-amylase | ||
| PLN02801 | PLN02801 | 6.0e-84 | 2 | 367 | 382 | + beta-amylase | ||
| PLN02161 | PLN02161 | 8.0e-89 | 4 | 368 | 378 | + beta-amylase | ||
| PLN00197 | PLN00197 | 1.0e-96 | 2 | 369 | 380 | + beta-amylase; Provisional | ||
| PLN02803 | PLN02803 | 1.0e-103 | 2 | 371 | 377 | + beta-amylase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0000272 | polysaccharide catabolic process |
| GO:0016161 | beta-amylase activity |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAD38148.1 | 0 | 1 | 400 | 52 | 450 | AF139501_1 beta-amylase [Prunus armeniaca] |
| EMBL | CAN66037.1 | 0 | 1 | 398 | 138 | 537 | hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002276777.1 | 0 | 1 | 398 | 138 | 537 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002312750.1 | 0 | 1 | 382 | 56 | 437 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002516865.1 | 0 | 1 | 400 | 144 | 545 | Beta-amylase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1fa2_A | 0 | 3 | 393 | 67 | 464 | A Chain A, Crystal Structure Of Beta-Amylase From Sweet Potato |
| PDB | 1v3i_A | 0 | 3 | 367 | 66 | 441 | A Chain A, The Roles Of Glu186 And Glu380 In The Catalytic Reaction Of Soybean Beta-Amylase |
| PDB | 1q6g_A | 0 | 3 | 367 | 66 | 441 | A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant (N340t) With Increased Ph Optimum |
| PDB | 1wds_A | 0 | 3 | 367 | 66 | 441 | A Chain A, The Role Of An Inner Loop In The Catalytic Mechanism Of Soybean Beta- Amylase |
| PDB | 1wdr_A | 0 | 3 | 367 | 66 | 441 | A Chain A, The Role Of An Inner Loop In The Catalytic Mechanism Of Soybean Beta-Amylase |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| starch degradation I | RXN-1827 | EC-3.2.1.2 | β-amylase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| HO781436 | 378 | 1 | 378 | 0 |
| HO796964 | 367 | 12 | 378 | 0 |
| EG631213 | 354 | 48 | 401 | 0 |
| DT513316 | 240 | 162 | 401 | 0 |
| JK988307 | 303 | 67 | 369 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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