Basic Information | |
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Species | Populus trichocarpa |
Cazyme ID | Potri.008G211500.1 |
Family | GH28 |
Protein Properties | Length: 451 Molecular Weight: 48681.7 Isoelectric Point: 4.6098 |
Chromosome | Chromosome/Scaffold: 08 Start: 16533326 End: 16536830 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 72 | 416 | 0 |
DKGGAQLYVPPGKWLTGSFSLTSHLTLFVEKGAVILGSQDPSHWDLVDPLPSYGRGIELPGKRYQSLINGDMLHDVVVTGDNGTIDGQGSVWWDWFESHS LNYSRPHLVEFTSSDYVVVSNLTFLNAPAYSIHPVYCSNVVVQNISVSAPGESPYTTGIVPDSSNNVCIEDSRIEVGYDAISLKSGWDEYGIAYDRPTTD VYIRRVYLQSSSGSSVAFGSEMSGGISNVHVEQVHIYNSFSGIEFRTTKGRGGYIKRIIISDVELKNTNTAFGAIGDCGSHPDDNFDPNAIPVLDQITLQ GVIGSNITMAGNFTGLAESPFTSLCLFNVSLAIRNTLSPWTCSNV |
Full Sequence |
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Protein Sequence Length: 451 Download |
MKMPVAVLLL LALSIAIRID AEESSEVCGF KPSLKPRPHS VSILEFGAVG DGKTLNTLAF 60 QNAIFYLKSF TDKGGAQLYV PPGKWLTGSF SLTSHLTLFV EKGAVILGSQ DPSHWDLVDP 120 LPSYGRGIEL PGKRYQSLIN GDMLHDVVVT GDNGTIDGQG SVWWDWFESH SLNYSRPHLV 180 EFTSSDYVVV SNLTFLNAPA YSIHPVYCSN VVVQNISVSA PGESPYTTGI VPDSSNNVCI 240 EDSRIEVGYD AISLKSGWDE YGIAYDRPTT DVYIRRVYLQ SSSGSSVAFG SEMSGGISNV 300 HVEQVHIYNS FSGIEFRTTK GRGGYIKRII ISDVELKNTN TAFGAIGDCG SHPDDNFDPN 360 AIPVLDQITL QGVIGSNITM AGNFTGLAES PFTSLCLFNV SLAIRNTLSP WTCSNVVGFS 420 ESVSPEPCPE LESSSVCYSL LNSYGKSTDI * |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02188 | PLN02188 | 1.0e-13 | 39 | 264 | 237 | + polygalacturonase/glycoside hydrolase family protein | ||
pfam00295 | Glyco_hydro_28 | 6.0e-16 | 146 | 416 | 283 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN03003 | PLN03003 | 2.0e-17 | 39 | 257 | 219 | + Probable polygalacturonase At3g15720 | ||
PLN02218 | PLN02218 | 1.0e-20 | 38 | 257 | 234 | + polygalacturonase ADPG | ||
COG5434 | PGU1 | 1.0e-40 | 22 | 392 | 416 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI22951.1 | 0 | 16 | 429 | 14 | 428 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002273305.1 | 0 | 1 | 429 | 1 | 430 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002314352.1 | 0 | 14 | 434 | 12 | 432 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002328589.1 | 0 | 1 | 450 | 1 | 450 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002516982.1 | 0 | 3 | 450 | 1 | 454 | Polygalacturonase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 2e-32 | 10 | 333 | 1 | 345 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 2e-32 | 10 | 333 | 1 | 345 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 2e-32 | 10 | 333 | 1 | 345 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 2e-32 | 10 | 333 | 1 | 345 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 1bhe_A | 0.000000000003 | 85 | 338 | 52 | 303 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |