Basic Information | |
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Species | Populus trichocarpa |
Cazyme ID | Potri.008G211900.1 |
Family | GH28 |
Protein Properties | Length: 465 Molecular Weight: 50142.6 Isoelectric Point: 5.6002 |
Chromosome | Chromosome/Scaffold: 08 Start: 16625577 End: 16628652 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 89 | 419 | 0 |
TACTTPKSVFLVPPGRHYMVNATRFKGPCADRLVIQIDGTIVAPDEPKNWDPNLPRLWLYFSKLNGVLFQGNGVIDGSGSKWWASSCKKNKSNPCRGAPT ALTIDSSSAVKINGLTIQNSQQMHFVISHSDSVRVSDVLVSAPEDSPNTDGIHITGSTNVVLQDCKIGTGDDCVSIVNGSSNIKMKRIFCGPGHGISIGS LGKDNSTGMVTKVVLDTAFLRETTNGLRIKTWQGGHGYVRGVRFENVGMENVANPVIIDQFYCDSPKTCHNQTSAVEISEITYRNISGTTKSSKAMKFAC SDTVPCSNIVLSNINLEKNDGTEETYCNSAQ |
Full Sequence |
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Protein Sequence Length: 465 Download |
MDKFFFISIL GLLIVAHGVA GNMACDSIAM LEKLENFVIE EVDETEFSKV VPSWTSERGG 60 KVLVNVDSFG AIGDGVSDDT QAFEKAWNTA CTTPKSVFLV PPGRHYMVNA TRFKGPCADR 120 LVIQIDGTIV APDEPKNWDP NLPRLWLYFS KLNGVLFQGN GVIDGSGSKW WASSCKKNKS 180 NPCRGAPTAL TIDSSSAVKI NGLTIQNSQQ MHFVISHSDS VRVSDVLVSA PEDSPNTDGI 240 HITGSTNVVL QDCKIGTGDD CVSIVNGSSN IKMKRIFCGP GHGISIGSLG KDNSTGMVTK 300 VVLDTAFLRE TTNGLRIKTW QGGHGYVRGV RFENVGMENV ANPVIIDQFY CDSPKTCHNQ 360 TSAVEISEIT YRNISGTTKS SKAMKFACSD TVPCSNIVLS NINLEKNDGT EETYCNSAQG 420 FGYGVVHPSA DCLSSHAKNC NVIDQMKISE LSETSTEDII HTEL* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03010 | PLN03010 | 4.0e-84 | 65 | 420 | 360 | + polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 3.0e-90 | 91 | 410 | 320 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN03003 | PLN03003 | 7.0e-92 | 64 | 405 | 346 | + Probable polygalacturonase At3g15720 | ||
PLN02218 | PLN02218 | 1.0e-107 | 64 | 428 | 368 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 6.0e-142 | 52 | 435 | 386 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | NP_173760.2 | 0 | 14 | 459 | 16 | 460 | polygalacturonase [Arabidopsis thaliana] |
RefSeq | XP_002299032.1 | 0 | 1 | 464 | 1 | 469 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002317091.1 | 0 | 30 | 464 | 1 | 447 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002328587.1 | 0 | 1 | 445 | 1 | 445 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002525360.1 | 0 | 1 | 464 | 1 | 510 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 6e-23 | 159 | 379 | 115 | 338 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 2iq7_G | 4e-20 | 163 | 415 | 80 | 328 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 4e-20 | 163 | 415 | 80 | 328 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_E | 4e-20 | 163 | 415 | 80 | 328 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_D | 4e-20 | 163 | 415 | 80 | 328 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |