Basic Information | |
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Species | Populus trichocarpa |
Cazyme ID | Potri.009G038100.1 |
Family | GH28 |
Protein Properties | Length: 396 Molecular Weight: 43117.3 Isoelectric Point: 9.352 |
Chromosome | Chromosome/Scaffold: 09 Start: 4661132 End: 4662850 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 51 | 380 | 0 |
KNACKWNGKAVVLVPAGTYLLDSVKFEGECKGYMIFKVKGNVMAASKLKDINQWITFKYVNGLTVAGRGTFDGQGYKVWPCKINGRCQTLPISLRLEFIR NGKLQNIRSINSQNAHVSIFASSNLNITNVKLSAPQDSPNTDGIKISSSEEIRITRTSISTGDDCVAILNGSKNTHISQVFCGPGHGISVGSMGGNTLID NKDIVVGLAVTNSTFTNTSNGLRIKTWASRYEGLASGFTYEDIIMNDVEHPIIIDQQYCPSSSCDSKTASRIQIRDITYSNIRGTSKSKAAVTLNCSSIV PCKNIVLKDIRLVYTGNEGPASSICSNVHG |
Full Sequence |
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Protein Sequence Length: 396 Download |
MGFTRILFLT LLFVWAADVQ CQNVRIFNVK KYGAIPDGKT ENSKAFLEAW KNACKWNGKA 60 VVLVPAGTYL LDSVKFEGEC KGYMIFKVKG NVMAASKLKD INQWITFKYV NGLTVAGRGT 120 FDGQGYKVWP CKINGRCQTL PISLRLEFIR NGKLQNIRSI NSQNAHVSIF ASSNLNITNV 180 KLSAPQDSPN TDGIKISSSE EIRITRTSIS TGDDCVAILN GSKNTHISQV FCGPGHGISV 240 GSMGGNTLID NKDIVVGLAV TNSTFTNTSN GLRIKTWASR YEGLASGFTY EDIIMNDVEH 300 PIIIDQQYCP SSSCDSKTAS RIQIRDITYS NIRGTSKSKA AVTLNCSSIV PCKNIVLKDI 360 RLVYTGNEGP ASSICSNVHG YSYGLQNPPP CFRSA* |
Functional Domains Download unfiltered results here | ||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description |
PLN02218 | PLN02218 | 2.0e-86 | 28 | 362 | 345 | + polygalacturonase ADPG |
PLN02155 | PLN02155 | 9.0e-91 | 6 | 392 | 392 | + polygalacturonase |
pfam00295 | Glyco_hydro_28 | 9.0e-91 | 54 | 379 | 329 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. |
PLN02793 | PLN02793 | 6.0e-92 | 25 | 394 | 382 | + Probable polygalacturonase |
PLN02188 | PLN02188 | 8.0e-124 | 1 | 391 | 410 | + polygalacturonase/glycoside hydrolase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAF71796.1 | 0 | 25 | 393 | 33 | 412 | AC013430_5 F3F9.9 [Arabidopsis thaliana] |
RefSeq | NP_177961.2 | 0 | 25 | 393 | 33 | 404 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | XP_002273801.1 | 0 | 3 | 392 | 7 | 396 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002300425.1 | 0 | 25 | 391 | 1 | 367 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002314146.1 | 0 | 1 | 395 | 1 | 395 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 2e-20 | 115 | 362 | 113 | 361 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1nhc_F | 3e-17 | 113 | 378 | 72 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 3e-17 | 113 | 378 | 72 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 3e-17 | 113 | 378 | 72 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 3e-17 | 113 | 378 | 72 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |